Literature DB >> 12896860

Methods for reliability and uncertainty assessment and for applicability evaluations of classification- and regression-based QSARs.

Lennart Eriksson1, Joanna Jaworska, Andrew P Worth, Mark T D Cronin, Robert M McDowell, Paola Gramatica.   

Abstract

This article provides an overview of methods for reliability assessment of quantitative structure-activity relationship (QSAR) models in the context of regulatory acceptance of human health and environmental QSARs. Useful diagnostic tools and data analytical approaches are highlighted and exemplified. Particular emphasis is given to the question of how to define the applicability borders of a QSAR and how to estimate parameter and prediction uncertainty. The article ends with a discussion regarding QSAR acceptability criteria. This discussion contains a list of recommended acceptability criteria, and we give reference values for important QSAR performance statistics. Finally, we emphasize that rigorous and independent validation of QSARs is an essential step toward their regulatory acceptance and implementation.

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Year:  2003        PMID: 12896860      PMCID: PMC1241620          DOI: 10.1289/ehp.5758

Source DB:  PubMed          Journal:  Environ Health Perspect        ISSN: 0091-6765            Impact factor:   9.031


  19 in total

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5.  Alignment of flexible molecules at their receptor site using 3D descriptors and Hi-PCA.

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6.  PLS analysis of distance matrices to detect nonlinear relationships between biological potency and molecular properties.

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8.  Multivariate data analysis using D-optimal designs, partial least squares, and response surface modeling: A directional approach for the analysis of farnesyltransferase inhibitors.

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Journal:  J Med Chem       Date:  2000-05-04       Impact factor: 7.446

Review 9.  Use of QSARs in international decision-making frameworks to predict health effects of chemical substances.

Authors:  Mark T D Cronin; Joanna S Jaworska; John D Walker; Michael H I Comber; Christopher D Watts; Andrew P Worth
Journal:  Environ Health Perspect       Date:  2003-08       Impact factor: 9.031

Review 10.  Use of QSARs in international decision-making frameworks to predict ecologic effects and environmental fate of chemical substances.

Authors:  Mark T D Cronin; John D Walker; Joanna S Jaworska; Michael H I Comber; Christopher D Watts; Andrew P Worth
Journal:  Environ Health Perspect       Date:  2003-08       Impact factor: 9.031

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  133 in total

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Review 4.  QSAR without borders.

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5.  Megavariate analysis of environmental QSAR data. Part II--investigating very complex problem formulations using hierarchical, non-linear and batch-wise extensions of PCA and PLS.

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6.  Megavariate analysis of environmental QSAR data. Part I--a basic framework founded on principal component analysis (PCA), partial least squares (PLS), and statistical molecular design (SMD).

Authors:  Lennart Eriksson; Patrik L Andersson; Erik Johansson; Mats Tysklind
Journal:  Mol Divers       Date:  2006-06-13       Impact factor: 2.943

7.  A novel workflow for the inverse QSPR problem using multiobjective optimization.

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8.  QSPR model for bioconcentration factors of nonpolar organic compounds using molecular electronegativity distance vector descriptors.

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Journal:  Mol Divers       Date:  2009-04-15       Impact factor: 2.943

9.  Rationalizing lead optimization by consensus 2D- CoMFA CoMSIA GRIND (3D) QSAR guided fragment hopping in search of γ-secretase inhibitors.

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Review 10.  Integrative approaches for predicting in vivo effects of chemicals from their structural descriptors and the results of short-term biological assays.

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