Literature DB >> 22139475

Evaluating the applicability domain in the case of classification predictive models for carcinogenicity based on the counter propagation artificial neural network.

Natalja Fjodorova1, Marjana Novič, Alessandra Roncaglioni, Emilio Benfenati.   

Abstract

The applicability domain (AD) of models developed for regulatory use has attached great attention recently. The AD of quantitative structure-activity relationship (QSAR) models is the response and chemical structure space in which the model makes predictions with a given reliability. The evaluation of AD of regressions QSAR models for congeneric sets of chemicals can be find in many papers and books while the issue about metrics for the evaluation of an AD for the non-linear models (like neural networks) for the diverse set of chemicals represents the new field of investigations in QSAR studies. The scientific society is standing before the challenge to find out reliable way for the evaluation of an AD of non linear models. The new metrics for the evaluation of the AD of the counter propagation artificial neural network (CP ANN) models are discussed in the article: the Euclidean distances between an object (molecule) and the corresponding excited neuron of the neural network and between an object (molecule) and the representative object (vector of average values of descriptors). The investigation of the training and test sets chemicals coverage in the descriptors space was made with the respect to false predicted chemicals. The leverage approach was used to compare non linear (CP ANN) models with linear ones.

Mesh:

Substances:

Year:  2011        PMID: 22139475     DOI: 10.1007/s10822-011-9499-9

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  10 in total

1.  Application of counterpropagation artificial neural network for modelling properties of fish antibiotics.

Authors:  E Maran; M Novic; P Barbieri; J Zupan
Journal:  SAR QSAR Environ Res       Date:  2004 Oct-Dec       Impact factor: 3.000

Review 2.  QSAR applicabilty domain estimation by projection of the training set descriptor space: a review.

Authors:  Joanna Jaworska; Nina Nikolova-Jeliazkova; Tom Aldenberg
Journal:  Altern Lab Anim       Date:  2005-10       Impact factor: 1.303

3.  Current status of methods for defining the applicability domain of (quantitative) structure-activity relationships. The report and recommendations of ECVAM Workshop 52.

Authors:  Tatiana I Netzeva; Andrew Worth; Tom Aldenberg; Romualdo Benigni; Mark T D Cronin; Paolo Gramatica; Joanna S Jaworska; Scott Kahn; Gilles Klopman; Carol A Marchant; Glenn Myatt; Nina Nikolova-Jeliazkova; Grace Y Patlewicz; Roger Perkins; David Roberts; Terry Schultz; David W Stanton; Johannes J M van de Sandt; Weida Tong; Gilman Veith; Chihae Yang
Journal:  Altern Lab Anim       Date:  2005-04       Impact factor: 1.303

4.  A stepwise approach for defining the applicability domain of SAR and QSAR models.

Authors:  Sabcho Dimitrov; Gergana Dimitrova; Todor Pavlov; Nadezhda Dimitrova; Grace Patlewicz; Jay Niemela; Ovanes Mekenyan
Journal:  J Chem Inf Model       Date:  2005 Jul-Aug       Impact factor: 4.956

Review 5.  Predictive models for carcinogenicity and mutagenicity: frameworks, state-of-the-art, and perspectives.

Authors:  E Benfenati; R Benigni; D M Demarini; C Helma; D Kirkland; T M Martin; P Mazzatorta; G Ouédraogo-Arras; A M Richard; B Schilter; W G E J Schoonen; R D Snyder; C Yang
Journal:  J Environ Sci Health C Environ Carcinog Ecotoxicol Rev       Date:  2009-04       Impact factor: 3.781

6.  Distributed structure-searchable toxicity (DSSTox) public database network: a proposal.

Authors:  Ann M Richard; ClarLynda R Williams
Journal:  Mutat Res       Date:  2002-01-29       Impact factor: 2.433

7.  Quantitative and qualitative models for carcinogenicity prediction for non-congeneric chemicals using CP ANN method for regulatory uses.

Authors:  Natalja Fjodorova; Marjan Vračko; Marjan Tušar; Aneta Jezierska; Marjana Novič; Ralph Kühne; Gerrit Schüürmann
Journal:  Mol Divers       Date:  2009-08-15       Impact factor: 2.943

8.  New public QSAR model for carcinogenicity.

Authors:  Natalja Fjodorova; Marjan Vracko; Marjana Novic; Alessandra Roncaglioni; Emilio Benfenati
Journal:  Chem Cent J       Date:  2010-07-29       Impact factor: 4.215

9.  Critical assessment of QSAR models of environmental toxicity against Tetrahymena pyriformis: focusing on applicability domain and overfitting by variable selection.

Authors:  Igor V Tetko; Iurii Sushko; Anil Kumar Pandey; Hao Zhu; Alexander Tropsha; Ester Papa; Tomas Oberg; Roberto Todeschini; Denis Fourches; Alexandre Varnek
Journal:  J Chem Inf Model       Date:  2008-08-26       Impact factor: 4.956

Review 10.  Methods for reliability and uncertainty assessment and for applicability evaluations of classification- and regression-based QSARs.

Authors:  Lennart Eriksson; Joanna Jaworska; Andrew P Worth; Mark T D Cronin; Robert M McDowell; Paola Gramatica
Journal:  Environ Health Perspect       Date:  2003-08       Impact factor: 9.031

  10 in total
  1 in total

1.  Towards a generalized toxicity prediction model for oxide nanomaterials using integrated data from different sources.

Authors:  Jang-Sik Choi; My Kieu Ha; Tung Xuan Trinh; Tae Hyun Yoon; Hyung-Gi Byun
Journal:  Sci Rep       Date:  2018-04-17       Impact factor: 4.379

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.