Literature DB >> 21311723

e-Science, caGrid, and Translational Biomedical Research.

Joel Saltz1, Tahsin Kurc, Shannon Hastings, Stephen Langella, Scott Oster, David Ervin, Ashish Sharma, Tony Pan, Metin Gurcan, Justin Permar, Renato Ferreira, Philip Payne, Umit Catalyurek, Enrico Caserta, Gustavo Leone, Michael C Ostrowski, Ravi Madduri, Ian Foster, Subhashree Madhavan, Kenneth H Buetow, Krishnakant Shanbhag, Eliot Siegel.   

Abstract

Translational research projects target a wide variety of diseases, test many different kinds of biomedical hypotheses, and employ a large assortment of experimental methodologies. Diverse data, complex execution environments, and demanding security and reliability requirements make the implementation of these projects extremely challenging and require novel e-Science technologies.

Entities:  

Year:  2008        PMID： 21311723      PMCID： PMC3035203          DOI： 10.1109/MC.2008.459

Source DB:  PubMed          Journal:  Computer (Long Beach Calif)        ISSN： 0018-9162            Impact factor:   2.683


  8 in total

1.  caCORE: a common infrastructure for cancer informatics.

Authors:  Peter A Covitz; Frank Hartel; Carl Schaefer; Sherri De Coronado; Gilberto Fragoso; Himanso Sahni; Scott Gustafson; Kenneth H Buetow
Journal:  Bioinformatics       Date:  2003-12-12       Impact factor: 6.937

2.  myGrid: personalised bioinformatics on the information grid.

Authors:  Robert D Stevens; Alan J Robinson; Carole A Goble
Journal:  Bioinformatics       Date:  2003       Impact factor: 6.937

3.  Biomedical informatics research network: building a national collaboratory to hasten the derivation of new understanding and treatment of disease.

Authors:  Jeffrey S Grethe; Chaitan Baru; Amarnath Gupta; Mark James; Bertram Ludaescher; Maryann E Martone; Philip M Papadopoulos; Steven T Peltier; Arcot Rajasekar; Simone Santini; Ilya N Zaslavsky; Mark H Ellisman
Journal:  Stud Health Technol Inform       Date:  2005

4.  caGrid 1.0: an enterprise Grid infrastructure for biomedical research.

Authors:  Scott Oster; Stephen Langella; Shannon Hastings; David Ervin; Ravi Madduri; Joshua Phillips; Tahsin Kurc; Frank Siebenlist; Peter Covitz; Krishnakant Shanbhag; Ian Foster; Joel Saltz
Journal:  J Am Med Inform Assoc       Date:  2007-12-20       Impact factor: 4.497

5.  The Cancer Biomedical Informatics Grid (caBIG) Security Infrastructure.

Authors:  Stephen Langella; Scott Oster; Shannon Hastings; Frank Siebenlist; Joshua Phillips; David Ervin; Justin Permar; Tahsin Kurc; Joel Saltz
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

6.  The caCORE Software Development Kit: streamlining construction of interoperable biomedical information services.

Authors:  Joshua Phillips; Ram Chilukuri; Gilberto Fragoso; Denise Warzel; Peter A Covitz
Journal:  BMC Med Inform Decis Mak       Date:  2006-01-06       Impact factor: 2.796

7.  Taverna: a tool for building and running workflows of services.

Authors:  Duncan Hull; Katy Wolstencroft; Robert Stevens; Carole Goble; Mathew R Pocock; Peter Li; Tom Oinn
Journal:  Nucleic Acids Res       Date:  2006-07-01       Impact factor: 16.971

8.  GridIMAGE: a novel use of grid computing to support interactive human and computer-assisted detection decision support.

Authors:  Metin N Gurcan; Tony Pan; Ashish Sharma; Tahsin Kurc; Scott Oster; Stephen Langella; Shannon Hastings; Khan M Siddiqui; Eliot L Siegel; Joel Saltz
Journal:  J Digit Imaging       Date:  2007-06       Impact factor: 4.056
  8 in total
  8 in total

1.  Improving normal tissue complication probability models: the need to adopt a "data-pooling" culture.

Authors:  Joseph O Deasy; Søren M Bentzen; Andrew Jackson; Randall K Ten Haken; Ellen D Yorke; Louis S Constine; Ashish Sharma; Lawrence B Marks
Journal:  Int J Radiat Oncol Biol Phys       Date:  2010-03-01       Impact factor: 7.038

2.  Histopathological Image Analysis: Path to Acceptance through Evaluation.

Authors:  Metin N Gurcan
Journal:  Microsc Microanal       Date:  2016-07-25       Impact factor: 4.127

Review 3.  Accelerating cancer systems biology research through Semantic Web technology.

Authors:  Zhihui Wang; Jonathan Sagotsky; Thomas Taylor; Patrick Shironoshita; Thomas S Deisboeck
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2012-11-27

4.  HPC AND GRID COMPUTING FOR INTEGRATIVE BIOMEDICAL RESEARCH.

Authors:  Tahsin Kurc; Shannon Hastings; Vijay Kumar; Stephen Langella; Ashish Sharma; Tony Pan; Scott Oster; David Ervin; Justin Permar; Sivaramakrishnan Narayanan; Yolanda Gil; Ewa Deelman; Mary Hall; Joel Saltz
Journal:  Int J High Perform Comput Appl       Date:  2009-08-01       Impact factor: 1.942

5.  CaGrid Workflow Toolkit: a Taverna based workflow tool for cancer grid.

Authors:  Wei Tan; Ravi Madduri; Alexandra Nenadic; Stian Soiland-Reyes; Dinanath Sulakhe; Ian Foster; Carole A Goble
Journal:  BMC Bioinformatics       Date:  2010-11-02       Impact factor: 3.169

6.  caGrid-Enabled caBIG Silver Level Compatible Head and Neck Cancer Tissue Database System.

Authors:  Haibin Wang; Erik Bouzyk; Anna Kuehn; Susan Muller; Zhengjia Chen; Fadlo R Khuri; Dong M Shin; André Rogatko; Mourad Tighiouart
Journal:  Open Med Inform J       Date:  2010-09-01

7.  Inter-reader variability in follicular lymphoma grading: Conventional and digital reading.

Authors:  Gerard Lozanski; Michael Pennell; Arwa Shana'ah; Weiqiang Zhao; Amy Gewirtz; Frederick Racke; Eric Hsi; Sabrina Simpson; Claudio Mosse; Shadia Alam; Sharon Swierczynski; Robert P Hasserjian; Metin N Gurcan
Journal:  J Pathol Inform       Date:  2013-10-29

8.  E-Science technologies in a workflow for personalized medicine using cancer screening as a case study.

Authors:  Ola Spjuth; Andreas Karlsson; Mark Clements; Keith Humphreys; Emma Ivansson; Jim Dowling; Martin Eklund; Alexandra Jauhiainen; Kamila Czene; Henrik Grönberg; Pär Sparén; Fredrik Wiklund; Abbas Cheddad; Þorgerður Pálsdóttir; Mattias Rantalainen; Linda Abrahamsson; Erwin Laure; Jan-Eric Litton; Juni Palmgren
Journal:  J Am Med Inform Assoc       Date:  2017-09-01       Impact factor: 4.497
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.