Literature DB >> 12847524

Essentiality, not expressiveness, drives gene-strand bias in bacteria.

Eduardo P C Rocha1, Antoine Danchin.   

Abstract

Preferential positioning of bacterial genes in the leading strand was thought to result from selection to avoid high head-on collision rates between DNA and RNA polymerases. Here we show, however, that in Bacillus subtilis and Escherichia coli, essentiality (the transcript product), not expressiveness (the collision rate), selectively drives the biased gene distribution.

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Year:  2003        PMID: 12847524     DOI: 10.1038/ng1209

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  97 in total

Review 1.  Replication-transcription conflicts in bacteria.

Authors:  Houra Merrikh; Yan Zhang; Alan D Grossman; Jue D Wang
Journal:  Nat Rev Microbiol       Date:  2012-06-06       Impact factor: 60.633

2.  Gene essentiality determines chromosome organisation in bacteria.

Authors:  Eduardo P C Rocha; Antoine Danchin
Journal:  Nucleic Acids Res       Date:  2003-11-15       Impact factor: 16.971

Review 3.  Error prevention and mitigation as forces in the evolution of genes and genomes.

Authors:  Tobias Warnecke; Laurence D Hurst
Journal:  Nat Rev Genet       Date:  2011-11-18       Impact factor: 53.242

4.  Genomic arrangement of bacterial operons is constrained by biological pathways encoded in the genome.

Authors:  Yanbin Yin; Han Zhang; Victor Olman; Ying Xu
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-22       Impact factor: 11.205

5.  Phenotypic landscape of a bacterial cell.

Authors:  Robert J Nichols; Saunak Sen; Yoe Jin Choo; Pedro Beltrao; Matylda Zietek; Rachna Chaba; Sueyoung Lee; Krystyna M Kazmierczak; Karis J Lee; Angela Wong; Michael Shales; Susan Lovett; Malcolm E Winkler; Nevan J Krogan; Athanasios Typas; Carol A Gross
Journal:  Cell       Date:  2010-12-23       Impact factor: 41.582

6.  Human gene organization driven by the coordination of replication and transcription.

Authors:  Maxime Huvet; Samuel Nicolay; Marie Touchon; Benjamin Audit; Yves d'Aubenton-Carafa; Alain Arneodo; Claude Thermes
Journal:  Genome Res       Date:  2007-08-03       Impact factor: 9.043

7.  Mechanisms of transcription-replication collisions in bacteria.

Authors:  Ekaterina V Mirkin; Sergei M Mirkin
Journal:  Mol Cell Biol       Date:  2005-02       Impact factor: 4.272

8.  Impairment of replication fork progression mediates RNA polII transcription-associated recombination.

Authors:  Félix Prado; Andrés Aguilera
Journal:  EMBO J       Date:  2005-03-03       Impact factor: 11.598

9.  Selection for chromosome architecture in bacteria.

Authors:  Heather Hendrickson; Jeffrey G Lawrence
Journal:  J Mol Evol       Date:  2006-04-11       Impact factor: 2.395

10.  Transcription regulatory elements are punctuation marks for DNA replication.

Authors:  Ekaterina V Mirkin; Daniel Castro Roa; Evgeny Nudler; Sergei M Mirkin
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-02       Impact factor: 11.205

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