Literature DB >> 12842469

Crystal structures of the ferric, ferrous, and ferrous-NO forms of the Asp140Ala mutant of human heme oxygenase-1: catalytic implications.

Latesh Lad1, Jinling Wang, Huiying Li, Jonathan Friedman, B Bhaskar, Paul R Ortiz de Montellano, Thomas L Poulos.   

Abstract

Site-directed mutagenesis studies have shown that Asp140 in both human and rat heme oxygenase-1 is critical for enzyme activity. Here, we report the D140A mutant crystal structure in the Fe(III) and Fe(II) redox states as well as the Fe(II)-NO complex as a model for the Fe(II)-oxy complex. These structures are compared to the corresponding wild-type structures. The mutant and wild-type structures are very similar, except for the distal heme pocket solvent structure. In the Fe(III) D140A mutant one water molecule takes the place of the missing Asp140 carboxylate side-chain and a second water molecule, novel to the mutant, binds in the distal pocket. Upon reduction to the Fe(II) state, the distal helix running along one face of the heme moves closer to the heme in both the wild-type and mutant structures thus tightening the active site. NO binds to both the wild-type and mutant in a bent conformation that orients the NO O atom toward the alpha-meso heme carbon atom. A network of water molecules provides a H-bonded network to the NO ligand, suggesting a possible proton shuttle pathway required to activate dioxygen for catalysis. In the wild-type structure, Asp140 exhibits two conformations, suggesting a dynamic role for Asp140 in shuttling protons from bulk solvent via the water network to the iron-linked oxy complex. On the basis of these structures, we consider why the D140A mutant is inactive as a heme oxygenase but active as a peroxidase.

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Year:  2003        PMID: 12842469     DOI: 10.1016/s0022-2836(03)00578-3

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  21 in total

1.  Spectroscopic insights into axial ligation and active-site H-bonding in substrate-bound human heme oxygenase-2.

Authors:  Jessica D Gardner; Li Yi; Stephen W Ragsdale; Thomas C Brunold
Journal:  J Biol Inorg Chem       Date:  2010-05-26       Impact factor: 3.358

2.  Electronic properties of the highly ruffled heme bound to the heme degrading enzyme IsdI.

Authors:  Shin-ichi J Takayama; Georgia Ukpabi; Michael E P Murphy; A Grant Mauk
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-25       Impact factor: 11.205

Review 3.  Formation and Cleavage of C-C Bonds by Enzymatic Oxidation-Reduction Reactions.

Authors:  F Peter Guengerich; Francis K Yoshimoto
Journal:  Chem Rev       Date:  2018-06-22       Impact factor: 60.622

4.  New light on NO bonding in Fe(III) heme proteins from resonance Raman spectroscopy and DFT modeling.

Authors:  Alexandra V Soldatova; Mohammed Ibrahim; John S Olson; Roman S Czernuszewicz; Thomas G Spiro
Journal:  J Am Chem Soc       Date:  2010-04-07       Impact factor: 15.419

5.  The IsdG-family of haem oxygenases degrades haem to a novel chromophore.

Authors:  Michelle L Reniere; Georgia N Ukpabi; S Reese Harry; Donald F Stec; Robert Krull; David W Wright; Brian O Bachmann; Michael E Murphy; Eric P Skaar
Journal:  Mol Microbiol       Date:  2010-02-17       Impact factor: 3.501

6.  Solution 1H NMR characterization of substrate-free C. diphtheriae heme oxygenase: pertinence for determining magnetic axes in paramagnetic substrate complexes.

Authors:  Zhenming Du; Masaki Unno; Toshitaka Matsui; Masao Ikeda-Saito; Gerd N La Mar
Journal:  J Inorg Biochem       Date:  2010-07-01       Impact factor: 4.155

7.  Coupling of the distal hydrogen bond network to the exogenous ligand in substrate-bound, resting state human heme oxygenase.

Authors:  Dungeng Peng; Hiroshi Ogura; Wenfeng Zhu; Li-Hua Ma; John P Evans; Paul R Ortiz de Montellano; Gerd N La Mar
Journal:  Biochemistry       Date:  2009-12-01       Impact factor: 3.162

8.  Characterization of the spontaneous "aging" of the heme oxygenase from the pathological bacterium Neisseria meningitidis via cleavage of the C-terminus in contact with the substrate. Implications for functional studies and the crystal structure.

Authors:  Yangzhong Liu; Li-Hua Ma; Xuhong Zhang; Tadashi Yoshida; James D Satterlee; Gerd N La Mar
Journal:  Biochemistry       Date:  2006-03-28       Impact factor: 3.162

9.  Comparison of apo- and heme-bound crystal structures of a truncated human heme oxygenase-2.

Authors:  Christopher M Bianchetti; Li Yi; Stephen W Ragsdale; George N Phillips
Journal:  J Biol Chem       Date:  2007-10-26       Impact factor: 5.157

10.  Isoporphyrin intermediate in heme oxygenase catalysis. Oxidation of alpha-meso-phenylheme.

Authors:  John P Evans; Fernando Niemevz; Graciela Buldain; Paul Ortiz de Montellano
Journal:  J Biol Chem       Date:  2008-05-16       Impact factor: 5.157

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