Literature DB >> 12839818

Identification and tracing of Bifidobacterium species by use of enterobacterial repetitive intergenic consensus sequences.

Marco Ventura1, Valerie Meylan, Ralf Zink.   

Abstract

Eighty-nine Bifidobacterium strains from 26 species were identified and classified to the species level with an enterobacterial repetitive intergenic consensus (ERIC)-PCR approach. We demonstrated that ERIC-PCR is useful for a phylogenetic and taxonomical analysis but as well as for a species composition analysis of mixed bifidobacterial cultures isolated from dairy products and other environments.

Mesh：

Year:  2003        PMID： 12839818      PMCID： PMC165193          DOI： 10.1128/AEM.69.7.4296-4301.2003

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  20 in total

1.  Improved method for purification of bacterial DNA from bovine milk for detection of Brucella spp. by PCR.

Authors:  C Romero; I Lopez-Goñi
Journal:  Appl Environ Microbiol       Date:  1999-08       Impact factor: 4.792

2.  Analysis of fecal populations of bifidobacteria and lactobacilli and investigation of the immunological responses of their human hosts to the predominant strains.

Authors:  K Kimura; A L McCartney; M A McConnell; G W Tannock
Journal:  Appl Environ Microbiol       Date:  1997-09       Impact factor: 4.792

3.  Bifidobacterial diversity in human feces detected by genus-specific PCR and denaturing gradient gel electrophoresis.

Authors:  R M Satokari; E E Vaughan; A D Akkermans; M Saarela; W M de Vos
Journal:  Appl Environ Microbiol       Date:  2001-02       Impact factor: 4.792

4.  Distribution of bifidobacterial species in human intestinal microflora examined with 16S rRNA-gene-targeted species-specific primers.

Authors:  T Matsuki; K Watanabe; R Tanaka; M Fukuda; H Oyaizu
Journal:  Appl Environ Microbiol       Date:  1999-10       Impact factor: 4.792

5.  Differences in the hybridization pattern of Bacillus subtilis genes coding for rDNA depend on the method of DNA preparation.

Authors:  R N Waterhouse; L A Glover
Journal:  Appl Environ Microbiol       Date:  1993-03       Impact factor: 4.792

6.  The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract.

Authors:  Mark A Schell; Maria Karmirantzou; Berend Snel; David Vilanova; Bernard Berger; Gabriella Pessi; Marie-Camille Zwahlen; Frank Desiere; Peer Bork; Michele Delley; R David Pridmore; Fabrizio Arigoni
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-15       Impact factor: 11.205

7.  Molecular microbial analysis of Bifidobacterium isolates from different environments by the species-specific amplified ribosomal DNA restriction analysis (ARDRA).

Authors:  M Ventura; M Elli; R Reniero; R Zink
Journal:  FEMS Microbiol Ecol       Date:  2001-07       Impact factor: 4.194

8.  Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes.

Authors:  J Versalovic; T Koeuth; J R Lupski
Journal:  Nucleic Acids Res       Date:  1991-12-25       Impact factor: 16.971

9.  Typing of Listeria monocytogenes strains by repetitive element sequence-based PCR.

Authors:  B Jersek; P Gilot; M Gubina; N Klun; J Mehle; E Tcherneva; N Rijpens; L Herman
Journal:  J Clin Microbiol       Date:  1999-01       Impact factor: 5.948

10.  Isolation of a novel IS3 group insertion element and construction of an integration vector for Lactobacillus spp.

Authors:  D C Walker; T R Klaenhammer
Journal:  J Bacteriol       Date:  1994-09       Impact factor: 3.490
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  15 in total

1.  Gene structure and transcriptional organization of the dnaK operon of Bifidobacterium breve UCC 2003 and application of the operon in bifidobacterial tracing.

Authors:  Marco Ventura; Ralf Zink; Gerald F Fitzgerald; Douwe van Sinderen
Journal:  Appl Environ Microbiol       Date:  2005-01       Impact factor: 4.792

2.  Isolation and identification of bifidobacteriaceae from human saliva.

Authors:  David Beighton; Steven C Gilbert; Douglas Clark; Maria Mantzourani; Mustafa Al-Haboubi; Farida Ali; Elizabeth Ransome; Nicholas Hodson; Michael Fenlon; Liana Zoitopoulos; Jennifer Gallagher
Journal:  Appl Environ Microbiol       Date:  2008-08-22       Impact factor: 4.792

3.  Exploring the diversity of the bifidobacterial population in the human intestinal tract.

Authors:  Francesca Turroni; Elena Foroni; Paola Pizzetti; Vanessa Giubellini; Angela Ribbera; Paolo Merusi; Patrizio Cagnasso; Barbara Bizzarri; Gian Luigi de'Angelis; Fergus Shanahan; Douwe van Sinderen; Marco Ventura
Journal:  Appl Environ Microbiol       Date:  2009-01-23       Impact factor: 4.792

Review 4.  Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum.

Authors:  Marco Ventura; Carlos Canchaya; Andreas Tauch; Govind Chandra; Gerald F Fitzgerald; Keith F Chater; Douwe van Sinderen
Journal:  Microbiol Mol Biol Rev       Date:  2007-09       Impact factor: 11.056

5.  Prebiotic Oligosaccharides: Comparative Evaluation Using In Vitro Cultures of Infants' Fecal Microbiomes.

Authors:  J Stiverson; T Williams; J Chen; S Adams; D Hustead; P Price; J Guerrieri; J Deacon; Z Yu
Journal:  Appl Environ Microbiol       Date:  2014-09-19       Impact factor: 4.792

Review 6.  Genomic insights into bifidobacteria.

Authors:  Ju-Hoon Lee; Daniel J O'Sullivan
Journal:  Microbiol Mol Biol Rev       Date:  2010-09       Impact factor: 11.056

7.  Comparative sequence analysis of the tuf and recA genes and restriction fragment length polymorphism of the internal transcribed spacer region sequences supply additional tools for discriminating Bifidobacterium lactis from Bifidobacterium animalis.

Authors:  Marco Ventura; Ralf Zink
Journal:  Appl Environ Microbiol       Date:  2003-12       Impact factor: 4.792

8.  Characterization of the groEL and groES loci in Bifidobacterium breve UCC 2003: genetic, transcriptional, and phylogenetic analyses.

Authors:  Marco Ventura; Carlos Canchaya; Ralf Zink; Gerald F Fitzgerald; Douwe van Sinderen
Journal:  Appl Environ Microbiol       Date:  2004-10       Impact factor: 4.792

9.  Bifidobacterium lactis DSM 10140: identification of the atp (atpBEFHAGDC) operon and analysis of its genetic structure, characteristics, and phylogeny.

Authors:  Marco Ventura; Carlos Canchaya; Douwe van Sinderen; Gerald F Fitzgerald; Ralf Zink
Journal:  Appl Environ Microbiol       Date:  2004-05       Impact factor: 4.792

10.  Efficacy of BOX-PCR fingerprinting for taxonomic discrimination of bifidobacterial species isolated from diverse sources.

Authors:  Rajashree Jena; Prasanta Kumar Choudhury; Anil Kumar Puniya; Sudhir Kumar Tomar
Journal:  3 Biotech       Date:  2021-05-16       Impact factor: 2.893
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