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Literature DB >> 12824428

NEWT, a new taxonomy portal.

I Q H Phan¹, S F Pilbout, W Fleischmann, A Bairoch.

Abstract

NEWT is a new taxonomy portal to the SWISS-PROT protein sequence knowledgebase. It contains taxonomy data, which is updated daily, for the complete set of species represented in SWISS-PROT, as well as those stored at the NCBI. Users can navigate through the taxonomy tree and access corresponding SWISS-PROT protein entries. In addition, a manually curated selection of external links allows access to specific information on selected species. NEWT is available at http://www.ebi.ac.uk/newt/.

Mesh：

Year: 2003 PMID： 12824428 PMCID： PMC168923 DOI： 10.1093/nar/gkg516

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

4 in total

1. Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes.

Authors: R Apweiler; M Biswas; W Fleischmann; A Kanapin; Y Karavidopoulou; P Kersey; E V Kriventseva; V Mittard; N Mulder; I Phan; E Zdobnov
Journal: Nucleic Acids Res Date: 2001-01-01 Impact factor: 16.971

2. ExPASy: The proteomics server for in-depth protein knowledge and analysis.

Authors: Elisabeth Gasteiger; Alexandre Gattiker; Christine Hoogland; Ivan Ivanyi; Ron D Appel; Amos Bairoch
Journal: Nucleic Acids Res Date: 2003-07-01 Impact factor: 16.971

3. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

Authors: A Bairoch; R Apweiler
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

4. Database resources of the National Center for Biotechnology Information.

Authors: D L Wheeler; C Chappey; A E Lash; D D Leipe; T L Madden; G D Schuler; T A Tatusova; B A Rapp
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

4 in total

15 in total

1. Plant protein annotation in the UniProt Knowledgebase.

Authors: Michel Schneider; Amos Bairoch; Cathy H Wu; Rolf Apweiler
Journal: Plant Physiol Date: 2005-05 Impact factor: 8.340

2. The UniProtKB/Swiss-Prot Tox-Prot program: A central hub of integrated venom protein data.

Authors: Florence Jungo; Lydie Bougueleret; Ioannis Xenarios; Sylvain Poux
Journal: Toxicon Date: 2012-03-23 Impact factor: 3.033

Review 3. Polyploidy in fungi: evolution after whole-genome duplication.

Authors: Warren Albertin; Philippe Marullo
Journal: Proc Biol Sci Date: 2012-04-04 Impact factor: 5.349

4. BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models.

Authors: Chen Li; Marco Donizelli; Nicolas Rodriguez; Harish Dharuri; Lukas Endler; Vijayalakshmi Chelliah; Lu Li; Enuo He; Arnaud Henry; Melanie I Stefan; Jacky L Snoep; Michael Hucka; Nicolas Le Novère; Camille Laibe
Journal: BMC Syst Biol Date: 2010-06-29

5. Application of text-mining for updating protein post-translational modification annotation in UniProtKB.

Authors: Anne-Lise Veuthey; Alan Bridge; Julien Gobeill; Patrick Ruch; Johanna R McEntyre; Lydie Bougueleret; Ioannis Xenarios
Journal: BMC Bioinformatics Date: 2013-03-22 Impact factor: 3.169

6. Transcriptomics of in vitro immune-stimulated hemocytes from the Manila clam Ruditapes philippinarum using high-throughput sequencing.

Authors: Rebeca Moreira; Pablo Balseiro; Josep V Planas; Berta Fuste; Sergi Beltran; Beatriz Novoa; Antonio Figueras
Journal: PLoS One Date: 2012-04-19 Impact factor: 3.240