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Literature DB >> 12824424

PARSESNP: A tool for the analysis of nucleotide polymorphisms.

Abstract

PARSESNP is a tool for the display and analysis of polymorphisms in genes. Using a reference DNA sequence, an exon/intron position model and a list of polymorphisms, it determines the effects of these polymorphisms on the expressed gene product, as well as the changes in restriction enzyme recognition sites. It shows the locations and effects of the polymorphisms in summary on a stylized graphic and in detail on a display of the protein sequence aligned with the DNA sequence. The addition of a homology model, in the form of an alignment of related protein sequences, allows for prediction of the severity of missense changes. PARSESNP is available on the World Wide Web at http://www.proweb.org/parsesnp/.

Mesh：

Substances：
Proteins

Year: 2003 PMID： 12824424 PMCID： PMC168980 DOI： 10.1093/nar/gkg574

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

16 in total

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Authors: J G Henikoff; E A Greene; S Pietrokovski; S Henikoff
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

2. High-throughput screening for induced point mutations.

Authors: T Colbert; B J Till; R Tompa; S Reynolds; M N Steine; A T Yeung; C M McCallum; L Comai; S Henikoff
Journal: Plant Physiol Date: 2001-06 Impact factor: 8.340

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Authors: P C Ng; S Henikoff
Journal: Genome Res Date: 2001-05 Impact factor: 9.043

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Journal: Genome Res Date: 2003-03 Impact factor: 9.043

5. The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.

Authors: Brigitte Boeckmann; Amos Bairoch; Rolf Apweiler; Marie-Claude Blatter; Anne Estreicher; Elisabeth Gasteiger; Maria J Martin; Karine Michoud; Claire O'Donovan; Isabelle Phan; Sandrine Pilbout; Michel Schneider
Journal: Nucleic Acids Res Date: 2003-01-01 Impact factor: 16.971

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Journal: Bioinformatics Date: 1998 Impact factor: 6.937

7. Cyclooxygenase 1 (COX1) polymorphisms in African-American and Caucasian populations.

Authors: Cornelia M Ulrich; Jeannette Bigler; Justin Sibert; Elizabeth A Greene; Rachel Sparks; Christopher S Carlson; John D Potter
Journal: Hum Mutat Date: 2002-11 Impact factor: 4.878

8. Information content of binding sites on nucleotide sequences.

Authors: T D Schneider; G D Stormo; L Gold; A Ehrenfeucht
Journal: J Mol Biol Date: 1986-04-05 Impact factor: 5.469

9. Database resources of the National Center for Biotechnology.

Authors: David L Wheeler; Deanna M Church; Scott Federhen; Alex E Lash; Thomas L Madden; Joan U Pontius; Gregory D Schuler; Lynn M Schriml; Edwin Sequeira; Tatiana A Tatusova; Lukas Wagner
Journal: Nucleic Acids Res Date: 2003-01-01 Impact factor: 16.971

10. Amino acid substitution matrices from an information theoretic perspective.

Authors: S F Altschul
Journal: J Mol Biol Date: 1991-06-05 Impact factor: 5.469

44 in total

Review 1. Recent developments in genomewide association scans: a workshop summary and review.

Authors: Duncan C Thomas; Robert W Haile; David Duggan
Journal: Am J Hum Genet Date: 2005-08-01 Impact factor: 11.025

2. Development of Decreased-Gluten Wheat Enabled by Determination of the Genetic Basis of lys3a Barley.

Authors: Charles P Moehs; William J Austill; Aaron Holm; Tao A G Large; Dayna Loeffler; Jessica Mullenberg; Patrick S Schnable; Wayne Skinner; Jos van Boxtel; Liying Wu; Cate McGuire
Journal: Plant Physiol Date: 2019-01-29 Impact factor: 8.340

3. Genetic analysis of phytoene synthase 1 (Psy1) gene function and regulation in common wheat.

Authors: Shengnan Zhai; Genying Li; Youwei Sun; Jianmin Song; Jihu Li; Guoqi Song; Yulian Li; Hongqing Ling; Zhonghu He; Xianchun Xia
Journal: BMC Plant Biol Date: 2016-10-21 Impact factor: 4.215

4. Discovery of nucleotide polymorphisms in the Musa gene pool by Ecotilling.

Authors: Bradley J Till; Joanna Jankowicz-Cieslak; László Sági; Owen A Huynh; Hiroe Utsushi; Rony Swennen; Ryohei Terauchi; Chikelu Mba
Journal: Theor Appl Genet Date: 2010-06-30 Impact factor: 5.699

5. Forward and reverse genetics of rapid-cycling Brassica oleracea.

Authors: Edward Himelblau; Erin J Gilchrist; Kelly Buono; Colleen Bizzell; Laurie Mentzer; Robert Vogelzang; Thomas Osborn; Richard M Amasino; Isobel A P Parkin; George W Haughn
Journal: Theor Appl Genet Date: 2009-01-09 Impact factor: 5.699

6. TILLING mutants of Lotus japonicus reveal that nitrogen assimilation and fixation can occur in the absence of nodule-enhanced sucrose synthase.

Authors: Irmtraud Horst; Tracey Welham; Simon Kelly; Takakazu Kaneko; Shusei Sato; Satoshi Tabata; Martin Parniske; Trevor L Wang
Journal: Plant Physiol Date: 2007-04-27 Impact factor: 8.340

7. Expression of 9-cis-EPOXYCAROTENOID DIOXYGENASE4 is essential for thermoinhibition of lettuce seed germination but not for seed development or stress tolerance.

Authors: Heqiang Huo; Peetambar Dahal; Keshavulu Kunusoth; Claire M McCallum; Kent J Bradford
Journal: Plant Cell Date: 2013-03-15 Impact factor: 11.277