Literature DB >> 12824417

Swiss EMBnet node web server.

Laurent Falquet1, Lorenza Bordoli, Vassilios Ioannidis, Marco Pagni, C Victor Jongeneel.   

Abstract

EMBnet is a consortium of collaborating bioinformatics groups located mainly within Europe (http://www.embnet.org). Each member country is represented by a 'node', a group responsible for the maintenance of local services for their users (e.g. education, training, software, database distribution, technical support, helpdesk). Among these services a web portal with links and access to locally developed and maintained software is essential and different for each node. Our web portal targets biomedical scientists in Switzerland and elsewhere, offering them access to a collection of important sequence analysis tools mirrored from other sites or developed locally. We describe here the Swiss EMBnet node web site (http://www.ch.embnet.org), which presents a number of original services not available anywhere else.

Mesh:

Year:  2003        PMID: 12824417      PMCID: PMC168954          DOI: 10.1093/nar/gkg547

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  19 in total

1.  trEST, trGEN and Hits: access to databases of predicted protein sequences.

Authors:  M Pagni; C Iseli; T Junier; L Falquet; V Jongeneel; P Bucher
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  STACK: Sequence Tag Alignment and Consensus Knowledgebase.

Authors:  A Christoffels; A van Gelder; G Greyling; R Miller; T Hide; W Hide
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

3.  Dotlet: diagonal plots in a web browser.

Authors:  T Junier; M Pagni
Journal:  Bioinformatics       Date:  2000-02       Impact factor: 6.937

4.  ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences.

Authors:  C Iseli; C V Jongeneel; P Bucher
Journal:  Proc Int Conf Intell Syst Mol Biol       Date:  1999

5.  A Web interface generator for molecular biology programs in Unix.

Authors:  C Letondal
Journal:  Bioinformatics       Date:  2001-01       Impact factor: 6.937

6.  The Eukaryotic Promoter Database, EPD: new entry types and links to gene expression data.

Authors:  Viviane Praz; Rouaïda Périer; Claude Bonnard; Philipp Bucher
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

7.  The PROSITE database, its status in 2002.

Authors:  Laurent Falquet; Marco Pagni; Philipp Bucher; Nicolas Hulo; Christian J A Sigrist; Kay Hofmann; Amos Bairoch
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

8.  T-Coffee: A novel method for fast and accurate multiple sequence alignment.

Authors:  C Notredame; D G Higgins; J Heringa
Journal:  J Mol Biol       Date:  2000-09-08       Impact factor: 5.469

Review 9.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

10.  An HMM model for coiled-coil domains and a comparison with PSSM-based predictions.

Authors:  Mauro Delorenzi; Terry Speed
Journal:  Bioinformatics       Date:  2002-04       Impact factor: 6.937

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  6 in total

1.  The Eukaryotic Promoter Database EPD: the impact of in silico primer extension.

Authors:  Christoph D Schmid; Viviane Praz; Mauro Delorenzi; Rouaïda Périer; Philipp Bucher
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  MyHits: a new interactive resource for protein annotation and domain identification.

Authors:  Marco Pagni; Vassilios Ioannidis; Lorenzo Cerutti; Monique Zahn-Zabal; C Victor Jongeneel; Laurent Falquet
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

3.  Sequence motifs that distinguish ATP(CTP):tRNA nucleotidyl transferases from eubacterial poly(A) polymerases.

Authors:  Georges Martin; Walter Keller
Journal:  RNA       Date:  2004-06       Impact factor: 4.942

4.  Phylogenetic analysis and homology modelling of Paracentrotus lividus nectin.

Authors:  Caterina Costa; Carmela Cavalcante; Francesca Zito; Yukio Yokota; Valeria Matranga
Journal:  Mol Divers       Date:  2009-11-12       Impact factor: 2.943

5.  Air2p is critical for the assembly and RNA-binding of the TRAMP complex and the KOW domain of Mtr4p is crucial for exosome activation.

Authors:  Peter Holub; Jana Lalakova; Hana Cerna; Josef Pasulka; Marie Sarazova; Kristyna Hrazdilova; Maria Sanudo Arce; Fruzsina Hobor; Richard Stefl; Stepanka Vanacova
Journal:  Nucleic Acids Res       Date:  2012-03-08       Impact factor: 16.971

6.  A new yeast poly(A) polymerase complex involved in RNA quality control.

Authors:  Stepánka Vanácová; Jeannette Wolf; Georges Martin; Diana Blank; Sabine Dettwiler; Arno Friedlein; Hanno Langen; Gérard Keith; Walter Keller
Journal:  PLoS Biol       Date:  2005-04-19       Impact factor: 8.029

  6 in total

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