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Literature DB >> 12824320

Motif3D: Relating protein sequence motifs to 3D structure.

Abstract

Motif3D is a web-based protein structure viewer designed to allow sequence motifs, and in particular those contained in the fingerprints of the PRINTS database, to be visualised on three-dimensional (3D) structures. Additional functionality is provided for the rhodopsin-like G protein-coupled receptors, enabling fingerprint motifs of any of the receptors in this family to be mapped onto the single structure available, that of bovine rhodopsin. Motif3D can be used via the web interface available at: http://www.bioinf.man.ac.uk/dbbrowser/motif3d/motif3d.html.

Entities: Gene Species

Mesh：

Substances：
Proteins
Rhodopsin

Year: 2003 PMID： 12824320 PMCID： PMC168941 DOI： 10.1093/nar/gkg534

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

15 in total

Motif3D: Relating protein sequence motifs to 3D structure.

1. Increased coverage of protein families with the blocks database servers.

2. The EMOTIF database.

3. PDBsum: summaries and analyses of PDB structures.

4. COMBOSA3D: combining sequence alignments with three-dimensional structures.

5. Crystal structure of rhodopsin: A G protein-coupled receptor.

6. The PROSITE database, its status in 2002.

7. LigBase: a database of families of aligned ligand binding sites in known protein sequences and structures.

8. PRINTS and its automatic supplement, prePRINTS.

9. The Protein Data Bank and structural genomics.

10. JOY: protein sequence-structure representation and analysis.

1. A model for the evaluation of domain based classification of GPCR.

2. Quantification of protein group coherence and pathway assignment using functional association.

3. A protein short motif search tool using amino acid sequence and their secondary structure assignment.

4. ProKware: integrated software for presenting protein structural properties in protein tertiary structures.

Review 5. Conserved Functional Motifs and Homology Modeling to Predict Hidden Moonlighting Functional Sites.

6. seeMotif: exploring and visualizing sequence motifs in 3D structures.