Literature DB >> 11238080

COMBOSA3D: combining sequence alignments with three-dimensional structures.

P M Stothard1.   

Abstract

UNLABELLED: COMBOSA3D is a program that allows sequence conservation to be viewed in its proper three-dimensional environment. It superimposes sequence alignment information onto a protein structure using a customizable color scheme, which is also applied to a textual sequence alignment for reference. AVAILABILITY: The program can be tested at http://www.bioinformatics.org/combosa3d/, and the source code is freely available.

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Year:  2001        PMID： 11238080     DOI： 10.1093/bioinformatics/17.2.198

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  4 in total

1.  Motif3D: Relating protein sequence motifs to 3D structure.

Authors:  Anna Gaulton; Teresa K Attwood
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

2.  3MATRIX and 3MOTIF: a protein structure visualization system for conserved sequence motifs.

Authors:  Steven P Bennett; Lin Lu; Douglas L Brutlag
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

3.  Evaluation of sequence alignments and oligonucleotide probes with respect to three-dimensional structure of ribosomal RNA using ARB software package.

Authors:  Yadhu Kumar; Ralf Westram; Peter Kipfer; Harald Meier; Wolfgang Ludwig
Journal:  BMC Bioinformatics       Date:  2006-05-04       Impact factor: 3.169

Review 4.  Conserved Functional Motifs and Homology Modeling to Predict Hidden Moonlighting Functional Sites.

Authors:  Aloysius Wong; Chris Gehring; Helen R Irving
Journal:  Front Bioeng Biotechnol       Date:  2015-06-09
  4 in total

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