Literature DB >> 12819138

Analysis of the mouse transcriptome for genes involved in the function of the nervous system.

Stefano Gustincich1, Serge Batalov, Kirk W Beisel, Hidemasa Bono, Piero Carninci, Colin F Fletcher, Sean Grimmond, Nobutaka Hirokawa, Erich D Jarvis, Tim Jegla, Yuka Kawasawa, Julianna LeMieux, Harukata Miki, Elio Raviola, Rohan D Teasdale, Naoko Tominaga, Ken Yagi, Andreas Zimmer, Yoshihide Hayashizaki, Yasushi Okazaki.   

Abstract

We analyzed the mouse Representative Transcript and Protein Set for molecules involved in brain function. We found full-length cDNAs of many known brain genes and discovered new members of known brain gene families, including Family 3 G-protein coupled receptors, voltage-gated channels, and connexins. We also identified previously unknown candidates for secreted neuroactive molecules. The existence of a large number of unique brain ESTs suggests an additional molecular complexity that remains to be explored.A list of genes containing CAG stretches in the coding region represents a first step in the potential identification of candidates for hereditary neurological disorders.

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Year:  2003        PMID: 12819138      PMCID: PMC403671          DOI: 10.1101/gr.1135303

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  28 in total

1.  The shapes and numbers of amacrine cells: matching of photofilled with Golgi-stained cells in the rabbit retina and comparison with other mammalian species.

Authors:  M A MacNeil; J K Heussy; R F Dacheux; E Raviola; R H Masland
Journal:  J Comp Neurol       Date:  1999-10-18       Impact factor: 3.215

2.  The InterPro database, an integrated documentation resource for protein families, domains and functional sites.

Authors:  R Apweiler; T K Attwood; A Bairoch; A Bateman; E Birney; M Biswas; P Bucher; L Cerutti; F Corpet; M D Croning; R Durbin; L Falquet; W Fleischmann; J Gouzy; H Hermjakob; N Hulo; I Jonassen; D Kahn; A Kanapin; Y Karavidopoulou; R Lopez; B Marx; N J Mulder; T M Oinn; M Pagni; F Servant; C J Sigrist; E M Zdobnov
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

Review 3.  Novel neurotransmitters as natural ligands of orphan G-protein-coupled receptors.

Authors:  O Civelli; H P Nothacker; Y Saito; Z Wang; S H Lin; R K Reinscheid
Journal:  Trends Neurosci       Date:  2001-04       Impact factor: 13.837

Review 4.  Molecular diversity of K+ channels.

Authors:  W A Coetzee; Y Amarillo; J Chiu; A Chow; D Lau; T McCormack; H Moreno; M S Nadal; A Ozaita; D Pountney; M Saganich; E Vega-Saenz de Miera; B Rudy
Journal:  Ann N Y Acad Sci       Date:  1999-04-30       Impact factor: 5.691

Review 5.  Neuronal Ca2+ -activated Cl- channels--homing in on an elusive channel species.

Authors:  S Frings; D Reuter; S J Kleene
Journal:  Prog Neurobiol       Date:  2000-02       Impact factor: 11.685

Review 6.  Structure and regulation of voltage-gated Ca2+ channels.

Authors:  W A Catterall
Journal:  Annu Rev Cell Dev Biol       Date:  2000       Impact factor: 13.827

7.  High-efficiency full-length cDNA cloning.

Authors:  P Carninci; Y Hayashizaki
Journal:  Methods Enzymol       Date:  1999       Impact factor: 1.600

Review 8.  Molecular tinkering of G protein-coupled receptors: an evolutionary success.

Authors:  J Bockaert; J P Pin
Journal:  EMBO J       Date:  1999-04-01       Impact factor: 11.598

9.  Functional annotation of a full-length mouse cDNA collection.

Authors:  J Kawai; A Shinagawa; K Shibata; M Yoshino; M Itoh; Y Ishii; T Arakawa; A Hara; Y Fukunishi; H Konno; J Adachi; S Fukuda; K Aizawa; M Izawa; K Nishi; H Kiyosawa; S Kondo; I Yamanaka; T Saito; Y Okazaki; T Gojobori; H Bono; T Kasukawa; R Saito; K Kadota; H Matsuda; M Ashburner; S Batalov; T Casavant; W Fleischmann; T Gaasterland; C Gissi; B King; H Kochiwa; P Kuehl; S Lewis; Y Matsuo; I Nikaido; G Pesole; J Quackenbush; L M Schriml; F Staubli; R Suzuki; M Tomita; L Wagner; T Washio; K Sakai; T Okido; M Furuno; H Aono; R Baldarelli; G Barsh; J Blake; D Boffelli; N Bojunga; P Carninci; M F de Bonaldo; M J Brownstein; C Bult; C Fletcher; M Fujita; M Gariboldi; S Gustincich; D Hill; M Hofmann; D A Hume; M Kamiya; N H Lee; P Lyons; L Marchionni; J Mashima; J Mazzarelli; P Mombaerts; P Nordone; B Ring; M Ringwald; I Rodriguez; N Sakamoto; H Sasaki; K Sato; C Schönbach; T Seya; Y Shibata; K F Storch; H Suzuki; K Toyo-oka; K H Wang; C Weitz; C Whittaker; L Wilming; A Wynshaw-Boris; K Yoshida; Y Hasegawa; H Kawaji; S Kohtsuki; Y Hayashizaki
Journal:  Nature       Date:  2001-02-08       Impact factor: 49.962

10.  Regional and strain-specific gene expression mapping in the adult mouse brain.

Authors:  R Sandberg; R Yasuda; D G Pankratz; T A Carter; J A Del Rio; L Wodicka; M Mayford; D J Lockhart; C Barlow
Journal:  Proc Natl Acad Sci U S A       Date:  2000-09-26       Impact factor: 11.205

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  17 in total

1.  The mouse secretome: functional classification of the proteins secreted into the extracellular environment.

Authors:  Sean M Grimmond; Kevin C Miranda; Zheng Yuan; Melissa J Davis; David A Hume; Ken Yagi; Naoko Tominaga; Hidemasa Bono; Yoshihide Hayashizaki; Yasushi Okazaki; Rohan D Teasdale
Journal:  Genome Res       Date:  2003-06       Impact factor: 9.043

2.  Differential expression of glutamate receptors in avian neural pathways for learned vocalization.

Authors:  Kazuhiro Wada; Hironobu Sakaguchi; Erich D Jarvis; Masatoshi Hagiwara
Journal:  J Comp Neurol       Date:  2004-08-09       Impact factor: 3.215

3.  Gene discovery in genetically labeled single dopaminergic neurons of the retina.

Authors:  Stefano Gustincich; Massimo Contini; Manuela Gariboldi; Michelino Puopolo; Koji Kadota; Hidemasa Bono; Julianna LeMieux; Pamela Walsh; Piero Carninci; Yoshihide Hayashizaki; Yasushi Okazaki; Elio Raviola
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-26       Impact factor: 11.205

Review 4.  The complexity of the mammalian transcriptome.

Authors:  Stefano Gustincich; Albin Sandelin; Charles Plessy; Shintaro Katayama; Roberto Simone; Dejan Lazarevic; Yoshihide Hayashizaki; Piero Carninci
Journal:  J Physiol       Date:  2006-07-20       Impact factor: 5.182

Review 5.  Immunogenetic programs for viral induction of mucous cell metaplasia.

Authors:  Michael J Holtzman; John T Battaile; Anand C Patel
Journal:  Am J Respir Cell Mol Biol       Date:  2006-03-16       Impact factor: 6.914

Review 6.  Deorphanization of novel peptides and their receptors.

Authors:  Akihiko Ozawa; Iris Lindberg; Bryan Roth; Wesley K Kroeze
Journal:  AAPS J       Date:  2010-05-06       Impact factor: 4.009

7.  Modulation of the Ca2+ conductance of nicotinic acetylcholine receptors by Lypd6.

Authors:  Martin Darvas; Marco Morsch; Ildiko Racz; Seifollah Ahmadi; Dieter Swandulla; Andreas Zimmer
Journal:  Eur Neuropsychopharmacol       Date:  2009-04-29       Impact factor: 4.600

8.  Mouse lens connexin23 (Gje1) does not form functional gap junction channels but causes enhanced ATP release from HeLa cells.

Authors:  Stephan Sonntag; Goran Söhl; Radoslaw Dobrowolski; Jiong Zhang; Martin Theis; Elke Winterhager; Feliksas F Bukauskas; Klaus Willecke
Journal:  Eur J Cell Biol       Date:  2008-10-11       Impact factor: 4.492

9.  G protein-coupled receptor genes in the FANTOM2 database.

Authors:  Yuka Kawasawa; Louise M McKenzie; David P Hill; Hidemasa Bono; Masashi Yanagisawa
Journal:  Genome Res       Date:  2003-06       Impact factor: 9.043

10.  Connexin23 deletion does not affect lens transparency.

Authors:  Viviana M Berthoud; Peter J Minogue; Joseph I Snabb; Yulia Dzhashiashvili; Layne A Novak; Rebecca K Zoltoski; Brian Popko; Eric C Beyer
Journal:  Exp Eye Res       Date:  2016-03-31       Impact factor: 3.467

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