Literature DB >> 12813878

Overcoming obstacles in DNA sequencing of expression plasmids for short interfering RNAs.

Daniel C Ducat1, Francisco J Herrera, Steven J Triezenberg.   

Abstract

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Year:  2003        PMID： 12813878      PMCID： PMC1717023          DOI： 10.2144/03346bm04

Source DB:  PubMed          Journal:  Biotechniques        ISSN： 0736-6205            Impact factor:   1.993


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  12 in total

1.  Short hairpin RNAs (shRNAs) induce sequence-specific silencing in mammalian cells.

Authors:  Patrick J Paddison; Amy A Caudy; Emily Bernstein; Gregory J Hannon; Douglas S Conklin
Journal:  Genes Dev       Date:  2002-04-15       Impact factor: 11.361

2.  Expanding small RNA interference.

Authors:  Thomas Tuschl
Journal:  Nat Biotechnol       Date:  2002-05       Impact factor: 54.908

3.  U6 promoter-driven siRNAs with four uridine 3' overhangs efficiently suppress targeted gene expression in mammalian cells.

Authors:  Makoto Miyagishi; Kazunari Taira
Journal:  Nat Biotechnol       Date:  2002-05       Impact factor: 54.908

4.  Ancient pathways programmed by small RNAs.

Authors:  Phillip D Zamore
Journal:  Science       Date:  2002-05-17       Impact factor: 47.728

Review 5.  RNA interference.

Authors:  Gregory J Hannon
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

Review 6.  Gene silencing in mammals by small interfering RNAs.

Authors:  Michael T McManus; Phillip A Sharp
Journal:  Nat Rev Genet       Date:  2002-10       Impact factor: 53.242

7.  A system for stable expression of short interfering RNAs in mammalian cells.

Authors:  Thijn R Brummelkamp; René Bernards; Reuven Agami
Journal:  Science       Date:  2002-03-21       Impact factor: 47.728

8.  Expression of small interfering RNAs targeted against HIV-1 rev transcripts in human cells.

Authors:  Nan Sook Lee; Taikoh Dohjima; Gerhard Bauer; Haitang Li; Ming-Jie Li; Ali Ehsani; Paul Salvaterra; John Rossi
Journal:  Nat Biotechnol       Date:  2002-05       Impact factor: 54.908

9.  Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells.

Authors:  S M Elbashir; J Harborth; W Lendeckel; A Yalcin; K Weber; T Tuschl
Journal:  Nature       Date:  2001-05-24       Impact factor: 49.962

Review 10.  Antisense RNA: function and fate of duplex RNA in cells of higher eukaryotes.

Authors:  M Kumar; G G Carmichael
Journal:  Microbiol Mol Biol Rev       Date:  1998-12       Impact factor: 11.056
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  7 in total

1.  Fundamentals of sequencing of difficult templates--an overview.

Authors:  Jan Kieleczawa
Journal:  J Biomol Tech       Date:  2006-07

2.  Simple modifications of the standard DNA sequencing protocol allow for sequencing through siRNA hairpins and other repeats.

Authors:  Jan Kieleczawa
Journal:  J Biomol Tech       Date:  2005-09

3.  Identification of optimal protocols for sequencing difficult templates: results of the 2008 ABRF DNA Sequencing Research Group difficult template study 2008.

Authors:  Jan Kieleczawa; Debbie Adam; Doug Bintzler; Michelle Detwiler; David Needleman; Peter Schweitzer; Sushmita Singh; Robert Steen; Michael Zianni
Journal:  J Biomol Tech       Date:  2009-04

4.  Effect of primer proximity to a difficult-to-sequence region on read length and sequence quality.

Authors:  Jan Kieleczawa
Journal:  J Biomol Tech       Date:  2008-12

5.  Curcumin inhibits herpes simplex virus immediate-early gene expression by a mechanism independent of p300/CBP histone acetyltransferase activity.

Authors:  Sebla B Kutluay; James Doroghazi; Martha E Roemer; Steven J Triezenberg
Journal:  Virology       Date:  2008-01-14       Impact factor: 3.616

6.  Criteria for effective design, construction, and gene knockdown by shRNA vectors.

Authors:  Debra J Taxman; Laura R Livingstone; Jinghua Zhang; Brian J Conti; Heather A Iocca; Kristi L Williams; John D Lich; Jenny P-Y Ting; William Reed
Journal:  BMC Biotechnol       Date:  2006-01-24       Impact factor: 2.563

7.  Construction and Evaluation of Short Hairpin RNAs for Knockdown of Metadherin mRNA.

Authors:  Farahnaz Zare; Sedigheh Sharifzadeh; Abbas Behzad-Behbahani; Gholamreza Rafiei Dehbidi; Zahra Yousefi; Reza Ranjbaran; Noorossadat Seyyedi
Journal:  Avicenna J Med Biotechnol       Date:  2021 Oct-Dec
  7 in total

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