Literature DB >> 12787254

Activation tagging, a novel tool to dissect the functions of a gene family.

Miki Nakazawa1, Takanari Ichikawa, Akie Ishikawa, Hiroko Kobayashi, Yumi Tsuhara, Mika Kawashima, Kumiko Suzuki, Shu Muto, Minami Matsui.   

Abstract

In a screen for morphological mutants from the T1 generation of approximately 50 000 activation-tagging lines, we isolated four dominant mutants that showed hyponastic leaves, downward-pointing flowers and decreased apical dominance. We designated them isoginchaku (iso). The iso-1D and iso-2D are allelic mutants caused by activation of the AS2 gene. The T-DNAs were inserted in the 3' downstream region of AS2. Iso-3D and iso-4D are the other allelic mutants caused by activation of the ASL1/LBD36 gene. These two genes belong to the AS2 family that is composed of 42 genes in Arabidopsis. The only recessive mutation isolated from this gene family was of AS2, which resulted in a leaf morphology mutant. Applying reverse genetics using a database of activation-tagged T-DNA flanking sequences, we found a dominant mutant that we designated peacock1-D (pck1-D) in which the ASL5/LBD12 gene was activated by a T-DNA. The pck1-D mutants have lost apical dominance, have epinastic leaves and are sterile. These results strongly suggest that activation tagging is a powerful mutant-mining tool especially for genes that make up a gene family.

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Year:  2003        PMID: 12787254     DOI: 10.1046/j.1365-313x.2003.01758.x

Source DB:  PubMed          Journal:  Plant J        ISSN: 0960-7412            Impact factor:   6.417


  51 in total

1.  The Arabidopsis LATERAL ORGAN BOUNDARIES-domain gene ASYMMETRIC LEAVES2 functions in the repression of KNOX gene expression and in adaxial-abaxial patterning.

Authors:  Wan-ching Lin; Bin Shuai; Patricia S Springer
Journal:  Plant Cell       Date:  2003-09-24       Impact factor: 11.277

2.  Using high competent shoot apical meristems of cockscomb as explants for studying function of ASYMMETRIC LEAVES2-LIKE11 (ASL11) gene of Arabidopsis.

Authors:  Shao-Bo Sun; Lai-Sheng Meng; Xu-Dong Sun; Zhen-Hua Feng
Journal:  Mol Biol Rep       Date:  2010-03-21       Impact factor: 2.316

3.  Light-dependent polyploidy control by a CUE protein variant in Arabidopsis.

Authors:  Yuko Tsumoto; Takeshi Yoshizumi; Hirofumi Kuroda; Mika Kawashima; Takanari Ichikawa; Miki Nakazawa; Naoki Yamamoto; Minami Matsui
Journal:  Plant Mol Biol       Date:  2006-07       Impact factor: 4.076

4.  Formation and dissociation of the BSS1 protein complex regulates plant development via brassinosteroid signaling.

Authors:  Setsuko Shimada; Tomoyuki Komatsu; Ayumi Yamagami; Miki Nakazawa; Minami Matsui; Hiroshi Kawaide; Masahiro Natsume; Hiroyuki Osada; Tadao Asami; Takeshi Nakano
Journal:  Plant Cell       Date:  2015-02-06       Impact factor: 11.277

5.  Activation tagging, an efficient tool for functional analysis of the rice genome.

Authors:  Shuyan Wan; Jinxia Wu; Zhiguo Zhang; Xuehui Sun; Yaci Lv; Ci Gao; Yingda Ning; Jun Ma; Yupeng Guo; Qian Zhang; Xia Zheng; Caiying Zhang; Zhiying Ma; Tiegang Lu
Journal:  Plant Mol Biol       Date:  2008-10-02       Impact factor: 4.076

6.  RETARDED GROWTH OF EMBRYO1, a new basic helix-loop-helix protein, expresses in endosperm to control embryo growth.

Authors:  Youichi Kondou; Miki Nakazawa; Mika Kawashima; Takanari Ichikawa; Takeshi Yoshizumi; Kumiko Suzuki; Akie Ishikawa; Tomoko Koshi; Ryo Matsui; Shu Muto; Minami Matsui
Journal:  Plant Physiol       Date:  2008-06-20       Impact factor: 8.340

7.  A genome-wide gain-of function analysis of rice genes using the FOX-hunting system.

Authors:  Hidemitsu Nakamura; Makoto Hakata; Kou Amano; Akio Miyao; Naoko Toki; Mariko Kajikawa; Jinhuan Pang; Naokuni Higashi; Shigeko Ando; Seiichi Toki; Miki Fujita; Akiko Enju; Motoaki Seki; Miki Nakazawa; Takanari Ichikawa; Kazuo Shinozaki; Minami Matsui; Yoshiaki Nagamura; Hirohiko Hirochika; Hiroaki Ichikawa
Journal:  Plant Mol Biol       Date:  2007-10-10       Impact factor: 4.076

8.  Establishment of a soybean (Glycine max Merr. L) transposon-based mutagenesis repository.

Authors:  Melanie Mathieu; Elizabeth K Winters; Fanming Kong; Jinrong Wan; Shaoxing Wang; Helene Eckert; Diane Luth; Margie Paz; Christopher Donovan; Zhanyuan Zhang; David Somers; Kan Wang; Henry Nguyen; Randy C Shoemaker; Gary Stacey; Tom Clemente
Journal:  Planta       Date:  2008-10-15       Impact factor: 4.116

9.  TF-finder: a software package for identifying transcription factors involved in biological processes using microarray data and existing knowledge base.

Authors:  Xiaoqi Cui; Tong Wang; Huann-Sheng Chen; Victor Busov; Hairong Wei
Journal:  BMC Bioinformatics       Date:  2010-08-12       Impact factor: 3.169

10.  Characterization of genes in the ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES (AS2/LOB) family in Arabidopsis thaliana, and functional and molecular comparisons between AS2 and other family members.

Authors:  Yoko Matsumura; Hidekazu Iwakawa; Yasunori Machida; Chiyoko Machida
Journal:  Plant J       Date:  2009-01-19       Impact factor: 6.417

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