Literature DB >> 18830797

Activation tagging, an efficient tool for functional analysis of the rice genome.

Shuyan Wan1, Jinxia Wu, Zhiguo Zhang, Xuehui Sun, Yaci Lv, Ci Gao, Yingda Ning, Jun Ma, Yupeng Guo, Qian Zhang, Xia Zheng, Caiying Zhang, Zhiying Ma, Tiegang Lu.   

Abstract

Over the past 6 years, we have generated about 50,000 individual transgenic rice plants by an Agrobacterium-mediated transformation approach with the pER38 activation tagging vector. The vector contains tandemly arranged double 35S enhancers next to the right border of T-DNA. Expression analysis by reverse transcription-PCR indicates that the activation efficiency is high if the genes are located within 7 kb of the inserted double 35S enhancers. Comparative field phenotyping of part of the activation tagging and enhancer trapping populations in two generations (6,000 and 6,400 lines, respectively, in the T(0) generation, and 36,000 and 32,000 lines, respectively, in the T(1) generation) identified about four hundred dominant mutants. Characterization of a dominant mutant with a large leaf angle (M107) suggests that this mutant phenotype is caused by enhanced expression of CYP724B1/D11. The activation tagging pool described in this paper is a valuable alternative tool for functional analysis of the rice genome.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18830797     DOI: 10.1007/s11103-008-9406-5

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN: 0167-4412            Impact factor:   4.076


  44 in total

1.  Analysis of flanking sequences from dissociation insertion lines: a database for reverse genetics in Arabidopsis.

Authors:  S Parinov; M Sevugan; D Ye; W C Yang; M Kumaran; V Sundaresan
Journal:  Plant Cell       Date:  1999-12       Impact factor: 11.277

2.  The Arabidopsis knockout facility at the University of Wisconsin-Madison.

Authors:  M R Sussman; R M Amasino; J C Young; P J Krysan; S Austin-Phillips
Journal:  Plant Physiol       Date:  2000-12       Impact factor: 8.340

3.  A high-throughput Arabidopsis reverse genetics system.

Authors:  Allen Sessions; Ellen Burke; Gernot Presting; George Aux; John McElver; David Patton; Bob Dietrich; Patrick Ho; Johana Bacwaden; Cynthia Ko; Joseph D Clarke; David Cotton; David Bullis; Jennifer Snell; Trini Miguel; Don Hutchison; Bill Kimmerly; Theresa Mitzel; Fumiaki Katagiri; Jane Glazebrook; Marc Law; Stephen A Goff
Journal:  Plant Cell       Date:  2002-12       Impact factor: 11.277

4.  High throughput T-DNA insertion mutagenesis in rice: a first step towards in silico reverse genetics.

Authors:  Christophe Sallaud; Céline Gay; Pierre Larmande; Martine Bès; Pietro Piffanelli; Benoit Piégu; Gaétan Droc; Farid Regad; Emmanuelle Bourgeois; Donaldo Meynard; Christophe Périn; Xavier Sabau; Alain Ghesquière; Jean Christophe Glaszmann; Michel Delseny; Emmanuel Guiderdoni
Journal:  Plant J       Date:  2004-08       Impact factor: 6.417

5.  BRS1, a serine carboxypeptidase, regulates BRI1 signaling in Arabidopsis thaliana.

Authors:  J Li; K A Lease; F E Tax; J C Walker
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-24       Impact factor: 11.205

6.  Rapid isolation of high molecular weight plant DNA.

Authors:  M G Murray; W F Thompson
Journal:  Nucleic Acids Res       Date:  1980-10-10       Impact factor: 16.971

7.  Activation tagging in Arabidopsis.

Authors:  D Weigel; J H Ahn; M A Blázquez; J O Borevitz; S K Christensen; C Fankhauser; C Ferrándiz; I Kardailsky; E J Malancharuvil; M M Neff; J T Nguyen; S Sato; Z Y Wang; Y Xia; R A Dixon; M J Harrison; C J Lamb; M F Yanofsky; J Chory
Journal:  Plant Physiol       Date:  2000-04       Impact factor: 8.340

Review 8.  Functional genomics in Arabidopsis: large-scale insertional mutagenesis complements the genome sequencing project.

Authors:  S Parinov; V Sundaresan
Journal:  Curr Opin Biotechnol       Date:  2000-04       Impact factor: 9.740

9.  Rice mutant resources for gene discovery.

Authors:  Hirohiko Hirochika; Emmanuel Guiderdoni; Gynheung An; Yue-Ie Hsing; Moo Young Eun; Chang-Deok Han; Narayana Upadhyaya; Srinivasan Ramachandran; Qifa Zhang; Andy Pereira; Venkatesan Sundaresan; Hei Leung
Journal:  Plant Mol Biol       Date:  2004-02       Impact factor: 4.076

10.  A rice phenomics study--phenotype scoring and seed propagation of a T-DNA insertion-induced rice mutant population.

Authors:  Chyr-Guan Chern; Ming-Jen Fan; Su-May Yu; Ai-Ling Hour; Po-Chang Lu; Yao-Cheng Lin; Fu-Jin Wei; Sheng-Chung Huang; Shu Chen; Ming-Hsing Lai; Ching-Shan Tseng; Hsing-Mu Yen; Woei-Shyuan Jwo; Chen-Chia Wu; Tung-Lung Yang; Lung-Sheng Li; Yih-Cheng Kuo; Su-Mien Li; Charng-Pei Li; Chiu-Kai Wey; Arunee Trisiriroj; Hsing-Fang Lee; Yue-Ie C Hsing
Journal:  Plant Mol Biol       Date:  2007-08-14       Impact factor: 4.076

View more
  38 in total

1.  An Ac transposon system based on maize chromosome 4S for isolating long-distance-transposed Ac tags in the maize genome.

Authors:  Fei Wang; Zhaoying Li; Jun Fan; Pengfei Li; Wei Hu; Gang Wang; Zhengkai Xu; Rentao Song
Journal:  Genetica       Date:  2010-11-20       Impact factor: 1.082

2.  Application of T-DNA activation tagging to identify glutamate receptor-like genes that enhance drought tolerance in plants.

Authors:  Guihua Lu; Xiping Wang; Junhua Liu; Kun Yu; Yang Gao; Haiyan Liu; Changgui Wang; Wei Wang; Guokui Wang; Min Liu; Guanfan Mao; Binfeng Li; Jianying Qin; Mian Xia; Junli Zhou; Jingmei Liu; Shuqin Jiang; Hua Mo; Jinteng Cui; Nobuhiro Nagasawa; Shoba Sivasankar; Marc C Albertsen; Hajime Sakai; Barbara J Mazur; Michael W Lassner; Richard M Broglie
Journal:  Plant Cell Rep       Date:  2014-03-29       Impact factor: 4.570

3.  Mutual Regulation of Receptor-Like Kinase SIT1 and B'κ-PP2A Shapes the Early Response of Rice to Salt Stress.

Authors:  Ji-Long Zhao; Li-Qing Zhang; Ning Liu; Shou-Ling Xu; Zhi-Liang Yue; Lu-Lu Zhang; Zhi-Ping Deng; Alma L Burlingame; Da-Ye Sun; Zhi-Yong Wang; Ying Sun; Sheng-Wei Zhang
Journal:  Plant Cell       Date:  2019-06-20       Impact factor: 11.277

4.  Mutant resources in rice for functional genomics of the grasses.

Authors:  Arjun Krishnan; Emmanuel Guiderdoni; Gynheung An; Yue-ie C Hsing; Chang-deok Han; Myung Chul Lee; Su-May Yu; Narayana Upadhyaya; Srinivasan Ramachandran; Qifa Zhang; Venkatesan Sundaresan; Hirohiko Hirochika; Hei Leung; Andy Pereira
Journal:  Plant Physiol       Date:  2009-01       Impact factor: 8.340

5.  Characterization and RNA-seq analysis of underperformer, an activation-tagged potato mutant.

Authors:  Sukhwinder S Aulakh; Richard E Veilleux; Allan W Dickerman; Guozhu Tang; Barry S Flinn
Journal:  Plant Mol Biol       Date:  2013-12-04       Impact factor: 4.076

6.  High-throughput generation of an activation-tagged mutant library for functional genomic analyses in tobacco.

Authors:  Feng Liu; Daping Gong; Qian Zhang; Dawei Wang; Mengmeng Cui; Zhiguo Zhang; Guanshan Liu; Jinxia Wu; Yuanying Wang
Journal:  Planta       Date:  2014-11-19       Impact factor: 4.116

7.  DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice.

Authors:  Hongning Tong; Linchuan Liu; Yun Jin; Lin Du; Yanhai Yin; Qian Qian; Lihuang Zhu; Chengcai Chu
Journal:  Plant Cell       Date:  2012-06-08       Impact factor: 11.277

8.  Brassinosteroid regulates cell elongation by modulating gibberellin metabolism in rice.

Authors:  Hongning Tong; Yunhua Xiao; Dapu Liu; Shaopei Gao; Linchuan Liu; Yanhai Yin; Yun Jin; Qian Qian; Chengcai Chu
Journal:  Plant Cell       Date:  2014-11-04       Impact factor: 11.277

9.  Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis.

Authors:  Li-Ying Zhang; Ming-Yi Bai; Jinxia Wu; Jia-Ying Zhu; Hao Wang; Zhiguo Zhang; Wenfei Wang; Yu Sun; Jun Zhao; Xuehui Sun; Hongjuan Yang; Yunyuan Xu; Soo-Hwan Kim; Shozo Fujioka; Wen-Hui Lin; Kang Chong; Tiegang Lu; Zhi-Yong Wang
Journal:  Plant Cell       Date:  2009-12-15       Impact factor: 11.277

Review 10.  Natural and artificial mutants as valuable resources for functional genomics and molecular breeding.

Authors:  Shu-Ye Jiang; Srinivasan Ramachandran
Journal:  Int J Biol Sci       Date:  2010-04-28       Impact factor: 6.580

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.