Literature DB >> 15749772

Dielectric control of counterion-induced single-chain folding transition of DNA.

Damien Baigl1, Kenichi Yoshikawa.   

Abstract

In the presence of condensing agents, single chains of giant double-stranded DNA undergo a first-order phase transition between an elongated coil state and a folded compact state. To connect this like-charged attraction phenomenon to counterion condensation, we performed a series of single-chain experiments on aqueous solutions of DNA, where we varied the extent of counterion condensation by varying the relative dielectric constant epsilon(r) from 80 to 170. Single-chain observations of changes in the conformation of giant DNA were performed by transmission electron microscopy and fluorescence microscopy, with tetravalent spermine (SPM(4+)) as a condensing agent. At a fixed dielectric constant, single DNA chains fold into a compact state upon the addition of spermine, whereas at a constant spermine concentration single DNA chains unfold with an increase in epsilon(r). In both cases, the transition is largely discrete at the level of single chains. We found that the critical concentration of spermine necessary to induce the single-chain folding transition increases exponentially as the dielectric constant increases, corresponding to 87-88% of the DNA charge neutralized at the onset of the transition. We also observed that the toroidal morphology of compact DNA partially unfolds when epsilon(r) is increased.

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Year:  2005        PMID: 15749772      PMCID: PMC1305494          DOI: 10.1529/biophysj.105.059493

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  19 in total

1.  Elastically driven linker aggregation between two semiflexible polyelectrolytes.

Authors:  I Borukhov; R F Bruinsma; W M Gelbart; A J Liu
Journal:  Phys Rev Lett       Date:  2001-03-05       Impact factor: 9.161

2.  Large discrete transition in a single DNA molecule appears continuous in the ensemble.

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Journal:  Phys Rev Lett       Date:  1996-04-15       Impact factor: 9.161

3.  Cryoelectron microscopy of lambda phage DNA condensates in vitreous ice: the fine structure of DNA toroids.

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Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-04       Impact factor: 11.205

4.  Counterion distribution around DNA probed by solution X-ray scattering.

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Journal:  Phys Rev Lett       Date:  2003-05-08       Impact factor: 9.161

5.  Fluid dynamics: Vortex rings in a constant electric field.

Authors:  Yilong Han; David G Grier
Journal:  Nature       Date:  2003-07-17       Impact factor: 49.962

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Journal:  Q Rev Biophys       Date:  1978-05       Impact factor: 5.318

7.  Counterion-induced condesation of deoxyribonucleic acid. a light-scattering study.

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Journal:  Biochemistry       Date:  1979-05-29       Impact factor: 3.162

8.  Monomolecular condensation of lambda-DNA induced by cobalt hexamine.

Authors:  J Widom; R L Baldwin
Journal:  Biopolymers       Date:  1983-06       Impact factor: 2.505

9.  Osmotic effectors and DNA structure: effect of glycine on precipitation of DNA by multivalent cations.

Authors:  S Flock; R Labarbe; C Houssier
Journal:  J Biomol Struct Dyn       Date:  1995-08

10.  Exclusion of alcohols from spermidine-DNA assemblies: probing the physical basis of preferential hydration.

Authors:  Anne Hultgren; Donald C Rau
Journal:  Biochemistry       Date:  2004-06-29       Impact factor: 3.162

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  6 in total

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Authors:  Brian A Todd
Journal:  Biophys J       Date:  2009-07-22       Impact factor: 4.033

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Journal:  Langmuir       Date:  2019-09-25       Impact factor: 3.882

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Authors:  Benjamin P Cossins; Matthew P Jacobson; Victor Guallar
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4.  Single Molecular Demonstration of Modulating Charge Inversion of DNA.

Authors:  Yanwei Wang; Ruxia Wang; Bozhi Cao; Zilong Guo; Guangcan Yang
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5.  Photochromic switching of the DNA helicity induced by azobenzene derivatives.

Authors:  Marco Deiana; Ziemowit Pokladek; Joanna Olesiak-Banska; Piotr Młynarz; Marek Samoc; Katarzyna Matczyszyn
Journal:  Sci Rep       Date:  2016-06-24       Impact factor: 4.379

6.  In vitro transcription-translation using bacterial genome as a template to reconstitute intracellular profile.

Authors:  Kei Fujiwara; Tsunehito Sawamura; Tatsuya Niwa; Tatsuki Deyama; Shin-Ichiro M Nomura; Hideki Taguchi; Nobuhide Doi
Journal:  Nucleic Acids Res       Date:  2017-11-02       Impact factor: 16.971

  6 in total

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