Literature DB >> 12770877

A physical model of potassium channel activation: from energy landscape to gating kinetics.

Daniel Sigg1, Francisco Bezanilla.   

Abstract

We have developed a method for rapidly computing gating currents from a multiparticle ion channel model. Our approach is appropriate for energy landscapes that can be characterized by a network of well-defined activation pathways with barriers. To illustrate, we represented the gating apparatus of a channel subunit by an interacting pair of charged gating particles. Each particle underwent spatial diffusion along a bistable potential of mean force, with electrostatic forces coupling the two trajectories. After a step in membrane potential, relaxation of the smaller barrier charge led to a time-dependent reduction in the activation barrier of the principal gate charge. The resulting gating current exhibited a rising phase similar to that measured in voltage-dependent ion channels. Reduction of the two-dimensional diffusion landscape to a circular Markov model with four states accurately preserved the time course of gating currents on the slow timescale. A composite system containing four subunits leading to a concerted opening transition was used to fit a series of gating currents from the Shaker potassium channel. We end with a critique of the model with regard to current views on potassium channel structure.

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Year:  2003        PMID: 12770877      PMCID: PMC1302953          DOI: 10.1016/S0006-3495(03)75099-1

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  35 in total

Review 1.  Potassium channels: watching a voltage-sensor tilt and twist.

Authors:  M S Sansom
Journal:  Curr Biol       Date:  2000-03-09       Impact factor: 10.834

2.  Continuum model of voltage-dependent gating. Macroscopic conductance, gating current, and single-channel behavior.

Authors:  D G Levitt
Journal:  Biophys J       Date:  1989-03       Impact factor: 4.033

3.  A simple model of K+ channel activation in nerve membrane.

Authors:  J R Clay
Journal:  J Theor Biol       Date:  1995-07-12       Impact factor: 2.691

4.  Gating of Shaker K+ channels: I. Ionic and gating currents.

Authors:  E Stefani; L Toro; E Perozo; F Bezanilla
Journal:  Biophys J       Date:  1994-04       Impact factor: 4.033

5.  Mutations in the S4 region isolate the final voltage-dependent cooperative step in potassium channel activation.

Authors:  J L Ledwell; R W Aldrich
Journal:  J Gen Physiol       Date:  1999-03       Impact factor: 4.086

6.  Activation of Shaker potassium channels. III. An activation gating model for wild-type and V2 mutant channels.

Authors:  N E Schoppa; F J Sigworth
Journal:  J Gen Physiol       Date:  1998-02       Impact factor: 4.086

7.  Extracellular Mg(2+) modulates slow gating transitions and the opening of Drosophila ether-à-Go-Go potassium channels.

Authors:  C Y Tang; F Bezanilla; D M Papazian
Journal:  J Gen Physiol       Date:  2000-03       Impact factor: 4.086

8.  Shaker potassium channel gating. III: Evaluation of kinetic models for activation.

Authors:  W N Zagotta; T Hoshi; R W Aldrich
Journal:  J Gen Physiol       Date:  1994-02       Impact factor: 4.086

9.  Voltage-dependent structural interactions in the Shaker K(+) channel.

Authors:  S K Tiwari-Woodruff; M A Lin; C T Schulteis; D M Papazian
Journal:  J Gen Physiol       Date:  2000-02       Impact factor: 4.086

10.  Mg(2+) modulates voltage-dependent activation in ether-à-go-go potassium channels by binding between transmembrane segments S2 and S3.

Authors:  W R Silverman; C Y Tang; A F Mock; K B Huh; D M Papazian
Journal:  J Gen Physiol       Date:  2000-11       Impact factor: 4.086

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  20 in total

1.  Fast gating in the Shaker K+ channel and the energy landscape of activation.

Authors:  Daniel Sigg; Francisco Bezanilla; Enrico Stefani
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-12       Impact factor: 11.205

2.  A speed limit for conformational change of an allosteric membrane protein.

Authors:  Sudha Chakrapani; Anthony Auerbach
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-23       Impact factor: 11.205

3.  Modeling subunit cooperativity in opening of tetrameric ion channels.

Authors:  Ali Nekouzadeh; Jonathan R Silva; Yoram Rudy
Journal:  Biophys J       Date:  2008-07-11       Impact factor: 4.033

4.  Alternative splicing of Na(V)1.7 exon 5 increases the impact of the painful PEPD mutant channel I1461T.

Authors:  Brian W Jarecki; Patrick L Sheets; Yucheng Xiao; James O Jackson; Theodore R Cummins
Journal:  Channels (Austin)       Date:  2009-07-23       Impact factor: 2.581

5.  A multiscale model linking ion-channel molecular dynamics and electrostatics to the cardiac action potential.

Authors:  Jonathan R Silva; Hua Pan; Dick Wu; Ali Nekouzadeh; Keith F Decker; Jianmin Cui; Nathan A Baker; David Sept; Yoram Rudy
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-22       Impact factor: 11.205

6.  Coupling between the voltage-sensing and pore domains in a voltage-gated potassium channel.

Authors:  Eric V Schow; J Alfredo Freites; Alex Nizkorodov; Stephen H White; Douglas J Tobias
Journal:  Biochim Biophys Acta       Date:  2012-07

7.  Voltage-sensor conformation shapes the intra-membrane drug binding site that determines gambierol affinity in Kv channels.

Authors:  Ivan Kopljar; Alessandro Grottesi; Tessa de Block; Jon D Rainier; Jan Tytgat; Alain J Labro; Dirk J Snyders
Journal:  Neuropharmacology       Date:  2016-03-05       Impact factor: 5.250

8.  Multi-scale electrophysiology modeling: from atom to organ.

Authors:  Jonathan R Silva; Yoram Rudy
Journal:  J Gen Physiol       Date:  2010-06       Impact factor: 4.086

9.  Regulation of K+ flow by a ring of negative charges in the outer pore of BKCa channels. Part I: Aspartate 292 modulates K+ conduction by external surface charge effect.

Authors:  Trude Haug; Daniel Sigg; Sergio Ciani; Ligia Toro; Enrico Stefani; Riccardo Olcese
Journal:  J Gen Physiol       Date:  2004-08       Impact factor: 4.086

10.  New mechanism for voltage induced charge movement revealed in GPCRs--theory and experiments.

Authors:  Assaf Zohar; Noa Dekel; Boris Rubinsky; Hanna Parnas
Journal:  PLoS One       Date:  2010-01-22       Impact factor: 3.240

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