Literature DB >> 12766420

Cross-correlation suppressed T1 and NOE experiments for protein side-chain 13CH2 groups.

Changwen Jin1, Jeanine J Prompers, Rafael Brüschweiler.   

Abstract

Relaxation measurements of side-chain 13CH2-groups of uniformly 13C labeled human ubiquitin were performed at 600 MHz and 800 MHz magnetic field strength at 30 degrees C. Dipole-dipole cross-correlated relaxation effects in T1 experiments were suppressed by the combination of radio-frequency pulses and pulsed field gradients during the relaxation delay leading to monoexponential relaxation decays that allow a more accurate extraction of the 13C T1 relaxation times. Heteronuclear [1H]-13C NOEs obtained by using different proton saturation schemes indicate that the influence of cross-correlation is small. The experimental T1 and NOE data were interpreted in a model-free way in terms of a generalized order parameter and an internal correlation time.

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Year:  2003        PMID: 12766420     DOI: 10.1023/a:1023833407515

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  10 in total

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Journal:  Nat Struct Biol       Date:  2000-01

Review 2.  Nmr probes of molecular dynamics: overview and comparison with other techniques.

Authors:  A G Palmer
Journal:  Annu Rev Biophys Biomol Struct       Date:  2001

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Journal:  Nat Struct Biol       Date:  2000-09

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Journal:  Nat Struct Biol       Date:  1998-07

5.  Backbone and methyl dynamics of the regulatory domain of troponin C: anisotropic rotational diffusion and contribution of conformational entropy to calcium affinity.

Authors:  S M Gagné; S Tsuda; L Spyracopoulos; L E Kay; B D Sykes
Journal:  J Mol Biol       Date:  1998-05-08       Impact factor: 5.469

6.  Deuterium spin probes of side-chain dynamics in proteins. 1. Measurement of five relaxation rates per deuteron in (13)C-labeled and fractionally (2)H-enriched proteins in solution.

Authors:  Oscar Millet; D R Muhandiram; Nikolai R Skrynnikov; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2002-06-05       Impact factor: 15.419

7.  Deuterium spin probes of side-chain dynamics in proteins. 2. Spectral density mapping and identification of nanosecond time-scale side-chain motions.

Authors:  Nikolai R Skrynnikov; Oscar Millet; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2002-06-05       Impact factor: 15.419

8.  Dynamics of methyl groups in proteins as studied by proton-detected 13C NMR spectroscopy. Application to the leucine residues of staphylococcal nuclease.

Authors:  L K Nicholson; L E Kay; D M Baldisseri; J Arango; P E Young; A Bax; D A Torchia
Journal:  Biochemistry       Date:  1992-06-16       Impact factor: 3.162

9.  Fast internal main-chain dynamics of human ubiquitin.

Authors:  D M Schneider; M J Dellwo; A J Wand
Journal:  Biochemistry       Date:  1992-04-14       Impact factor: 3.162

10.  Internal dynamics of human ubiquitin revealed by 13C-relaxation studies of randomly fractionally labeled protein.

Authors:  A J Wand; J L Urbauer; R P McEvoy; R J Bieber
Journal:  Biochemistry       Date:  1996-05-14       Impact factor: 3.162

  10 in total
  6 in total

1.  Interference between cross-correlated relaxation and the measurement of scalar and dipolar couplings by Quantitative J.

Authors:  Eva de Alba; Nico Tjandra
Journal:  J Biomol NMR       Date:  2006-05-19       Impact factor: 2.835

2.  NMR relaxation parameters of methyl groups as a tool to map the interfaces of helix-helix interactions in membrane proteins.

Authors:  D M Lesovoy; K S Mineev; P E Bragin; O V Bocharova; E V Bocharov; A S Arseniev
Journal:  J Biomol NMR       Date:  2017-10-23       Impact factor: 2.835

3.  Protein side-chain dynamics and residual conformational entropy.

Authors:  Nikola Trbovic; Jae-Hyun Cho; Robert Abel; Richard A Friesner; Mark Rance; Arthur G Palmer
Journal:  J Am Chem Soc       Date:  2009-01-21       Impact factor: 15.419

4.  Conformational entropy changes upon lactose binding to the carbohydrate recognition domain of galectin-3.

Authors:  Carl Diehl; Samuel Genheden; Kristofer Modig; Ulf Ryde; Mikael Akke
Journal:  J Biomol NMR       Date:  2009-07-30       Impact factor: 2.835

5.  An investigation of the dynamics of spermine bound to duplex and quadruplex DNA by (13)C NMR spectroscopy.

Authors:  Max A Keniry; Elisabeth A Owen
Journal:  Eur Biophys J       Date:  2007-02-15       Impact factor: 2.095

Review 6.  NMR measurement of biomolecular translational and rotational motion for evaluating changes of protein oligomeric state in solution.

Authors:  Shenggen Yao; David W Keizer; Jeffrey J Babon; Frances Separovic
Journal:  Eur Biophys J       Date:  2022-04-05       Impact factor: 2.095

  6 in total

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