Literature DB >> 12741834

Reactions of Mycobacterium tuberculosis truncated hemoglobin O with ligands reveal a novel ligand-inclusive hydrogen bond network.

Hugues Ouellet1, Laura Juszczak, David Dantsker, Uri Samuni, Yannick H Ouellet, Pierre-Yves Savard, Jonathan B Wittenberg, Beatrice A Wittenberg, Joel M Friedman, Michel Guertin.   

Abstract

Truncated hemoglobin O (trHbO) is one of two trHbs in Mycobacterium tuberculosis. Remarkably, trHbO possesses two novel distal residues, in addition to the B10 tyrosine, that may be important in ligand binding. These are the CD1 tyrosine and G8 tryptophan. Here we investigate the reactions of trHbO and mutants using stopped-flow spectrometry, flash photolysis, and UV-enhanced resonance Raman spectroscopy. A biphasic kinetic behavior is observed for combination and dissociation of O(2) and CO that is controlled by the B10 and CD1 residues. The rate constants for combination (<1.0 microM(-1) s(-1)) and dissociation (<0.006 s(-1)) of O(2) are among the slowest known, precluding transport or diffusion of O(2) as a major function. Mutation of CD1 tyrosine to phenylalanine shows that this group controls ligand binding, as evidenced by 25- and 77-fold increases in the combination rate constants for O(2) and CO, respectively. In support of a functional role for G8 tryptophan, UV resonance Raman indicates that the chi((2,1)) dihedral angle for the indole ring increases progressively from approximately 93 degrees to at least 100 degrees in going sequentially from the deoxy to CO to O(2) derivative, demonstrating a significant conformational change in the G8 tryptophan with ligation. Remarkably, protein modeling predicts a network of hydrogen bonds between B10 tyrosine, CD1 tyrosine, and G8 tryptophan, with the latter residues being within hydrogen bonding distance of the heme-bound ligand. Such a rigid hydrogen bonding network may thus represent a considerable barrier to ligand entrance and escape. In accord with this model, we found that changing CD1 or B10 tyrosine for phenylalanine causes only small changes in the rate of O(2) dissociation, suggesting that more than one hydrogen bond must be broken at a time to promote ligand escape. Furthermore, trHbO-CO cannot be photodissociated under conditions where the CO derivative of myoglobin is extensively photodissociated, indicating that CO is constrained near the heme by the hydrogen bonding network.

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Year:  2003        PMID: 12741834     DOI: 10.1021/bi0270337

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  24 in total

1.  Ancestral hemoglobins in Archaea.

Authors:  Tracey Allen K Freitas; Shaobin Hou; Elhadji M Dioum; Jennifer A Saito; James Newhouse; Gonzalo Gonzalez; Marie-Alda Gilles-Gonzalez; Maqsudul Alam
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-19       Impact factor: 11.205

2.  A phylogenetic and structural analysis of truncated hemoglobins.

Authors:  David A Vuletich; Juliette T J Lecomte
Journal:  J Mol Evol       Date:  2006-02-10       Impact factor: 2.395

3.  Tyrosine B10 triggers a heme propionate hydrogen bonding network loop with glutamine E7 moiety.

Authors:  Brenda J Ramos-Santana; Juan López-Garriga
Journal:  Biochem Biophys Res Commun       Date:  2012-07-15       Impact factor: 3.575

4.  Purification and spectroscopic characterization of Ctb, a group III truncated hemoglobin implicated in oxygen metabolism in the food-borne pathogen Campylobacter jejuni.

Authors:  Laura M Wainwright; Yinghua Wang; Simon F Park; Syun-Ru Yeh; Robert K Poole
Journal:  Biochemistry       Date:  2006-05-16       Impact factor: 3.162

5.  A quantitative model for oxygen uptake and release in a family of hemeproteins.

Authors:  Juan P Bustamante; María E Szretter; Mariela Sued; Marcelo A Martí; Darío A Estrin; Leonardo Boechi
Journal:  Bioinformatics       Date:  2016-02-15       Impact factor: 6.937

6.  Two-step counterdiffusion protocol for the crystallization of haemoglobin II from Lucina pectinata in the pH range 4-9.

Authors:  Carlos A Nieves-Marrero; Carlos R Ruiz-Martínez; Rafael A Estremera-Andújar; Luis A González-Ramírez; Juan López-Garriga; José A Gavira
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Review 7.  Insights into redox sensing metalloproteins in Mycobacterium tuberculosis.

Authors:  Nicholas Chim; Parker M Johnson; Celia W Goulding
Journal:  J Inorg Biochem       Date:  2013-11-15       Impact factor: 4.155

Review 8.  The heme environment of mouse neuroglobin: histidine imidazole plane orientations obtained from solution NMR and EPR spectroscopy as compared with X-ray crystallography.

Authors:  F Ann Walker
Journal:  J Biol Inorg Chem       Date:  2006-04-04       Impact factor: 3.358

9.  Spectroscopic characterization of a truncated hemoglobin from the nitrogen-fixing bacterium Herbaspirillum seropedicae.

Authors:  Guilherme Razzera; Javier Vernal; Debora Baruh; Viviane I Serpa; Carolina Tavares; Flávio Lara; Emanuel M Souza; Fábio O Pedrosa; Fábio C L Almeida; Hernán Terenzi; Ana Paula Valente
Journal:  J Biol Inorg Chem       Date:  2008-06-12       Impact factor: 3.358

10.  Ligand migration in the truncated hemoglobin-II from Mycobacterium tuberculosis: the role of G8 tryptophan.

Authors:  Victor Guallar; Changyuan Lu; Kenneth Borrelli; Tsuyoshi Egawa; Syun-Ru Yeh
Journal:  J Biol Chem       Date:  2008-11-18       Impact factor: 5.157

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