Literature DB >> 12725785

An unsupervised automatic method for sorting neuronal spike waveforms in awake and freely moving animals.

Tetyana I Aksenova1, Olga K Chibirova, Oleksandr A Dryga, Igor V Tetko, Alim-Louis Benabid, Alessandro E P Villa.   

Abstract

The present study introduces an approach to automatic classification of extracellularly recorded action potentials of neurons. The classification of spike waveform is considered a pattern recognition problem of special segments of signal that correspond to the appearance of spikes. The spikes generated by one neuron should be recognized as members of the same class. The spike waveforms are described by the nonlinear oscillating model as an ordinary differential equation with perturbation, thus characterizing the signal distortions in both amplitude and phase. It is shown that the use of local variables reduces the problem of spike recognition to the separation of a mixture of normal distributions in the transformed feature space. We have developed an unsupervised iteration-learning algorithm that estimates the number of classes and their centers according to the distance between spike trajectories in phase space. This algorithm scans the learning set to evaluate spike trajectories with maximal probability density in their neighborhood. Following the learning, the procedure of minimal distance is used to perform spike recognition. Estimation of trajectories in phase space requires calculation of the first- and second-order derivatives, and integral operators with piecewise polynomial kernels were used. This provided the computational efficiency of the developed approach for real-time application as required by recordings in behaving animals and in human neurosurgical operations. The new method of spike sorting was tested on simulated and real data and performed better than other approaches currently used in neurophysiology.

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Year:  2003        PMID: 12725785     DOI: 10.1016/s1046-2023(03)00079-3

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  13 in total

1.  Timing and causality in the generation of learned eyelid responses.

Authors:  Raudel Sánchez-Campusano; Agnès Gruart; José M Delgado-García
Journal:  Front Integr Neurosci       Date:  2011-08-30

Review 2.  The relationship between built environments and physical activity: a systematic review.

Authors:  Alva O Ferdinand; Bisakha Sen; Saurabh Rahurkar; Sally Engler; Nir Menachemi
Journal:  Am J Public Health       Date:  2012-08-16       Impact factor: 9.308

3.  Reconstruction of underlying nonlinear deterministic dynamics embedded in noisy spike trains.

Authors:  Yoshiyuki Asai; Alessandro E P Villa
Journal:  J Biol Phys       Date:  2008-07-31       Impact factor: 1.365

4.  Efficient neural spike sorting using data subdivision and unification.

Authors:  Masood Ul Hassan; Rakesh Veerabhadrappa; Asim Bhatti
Journal:  PLoS One       Date:  2021-02-10       Impact factor: 3.240

Review 5.  An online spike detection and spike classification algorithm capable of instantaneous resolution of overlapping spikes.

Authors:  Felix Franke; Michal Natora; Clemens Boucsein; Matthias H J Munk; Klaus Obermayer
Journal:  J Comput Neurosci       Date:  2009-06-05       Impact factor: 1.621

6.  Optimizing the automatic selection of spike detection thresholds using a multiple of the noise level.

Authors:  Michael Rizk; Patrick D Wolf
Journal:  Med Biol Eng Comput       Date:  2009-02-10       Impact factor: 2.602

7.  Real-time position reconstruction with hippocampal place cells.

Authors:  Christoph Guger; Thomas Gener; Cyriel M A Pennartz; Jorge R Brotons-Mas; Günter Edlinger; S Bermúdez I Badia; Paul Verschure; Stefan Schaffelhofer; Maria V Sanchez-Vives
Journal:  Front Neurosci       Date:  2011-06-30       Impact factor: 4.677

8.  An agonist-antagonist cerebellar nuclear system controlling eyelid kinematics during motor learning.

Authors:  Raudel Sánchez-Campusano; Agnès Gruart; Rodrigo Fernández-Mas; José M Delgado-García
Journal:  Front Neuroanat       Date:  2012-03-14       Impact factor: 3.856

9.  Adaptive virtual referencing for the extraction of extracellularly recorded action potentials in noisy environments.

Authors:  Corey E Cruttenden; Wei Zhu; Yi Zhang; Soo Han Soon; Xiao-Hong Zhu; Wei Chen; Rajesh Rajamani
Journal:  J Neural Eng       Date:  2020-10-10       Impact factor: 5.379

10.  New Types of Experiments Reveal that a Neuron Functions as Multiple Independent Threshold Units.

Authors:  Shira Sardi; Roni Vardi; Anton Sheinin; Amir Goldental; Ido Kanter
Journal:  Sci Rep       Date:  2017-12-21       Impact factor: 4.379

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