Literature DB >> 12683838

A theoretical study on the mechanism of camphor hydroxylation by compound I of cytochrome p450.

Takashi Kamachi1, Kazunari Yoshizawa.   

Abstract

Mechanistic and energetic aspects for the conversion of camphor to 5-exo-hydroxycamphor by the compound I iron-oxo species of cytochrome P450 are discussed from B3LYP DFT calculations. This reaction occurs in a two-step manner along the lines that the oxygen rebound mechanism suggests. The activation energy for the first transition state of the H atom abstraction at the C5 atom of camphor is computed to be more than 20 kcal/mol. This H atom abstraction is the rate-determining step in this hydroxylation reaction, leading to a reaction intermediate that involves a carbon radical species and the iron-hydroxo species. The second transition state of the rebound step that connects the reaction intermediate and the product alcohol complex lies a few kcal/mol below that for the H atom abstraction on the doublet and quartet potential energy surfaces. This energetic feature allows the virtually barrierless recombination in both spin states, being consistent with experimentally observed high stereoselectivity and brief lifetimes of the reaction intermediate. The overall energetic profile of the catalytic mechanism of camphor hydroxylation particularly with respect to why the high activation energy for the H atom abstraction is accessible under physiological conditions is also considered and calculated. According to a proton source model involving Thr252, Asp251, and two solvent water molecules (Biochemistry 1998, 37, 9211), the energetics for the conversion of the iron-peroxo species to compound I is studied. A significant energy over 50 kcal/mol is released in the course of this dioxygen activation process. The energy released in this chemical process is an important driving force in alkane hydroxylation by cytochrome P450. This energy is used for the access to the high activation energy for the H atom abstraction.

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Year:  2003        PMID: 12683838     DOI: 10.1021/ja0208862

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  24 in total

1.  Successful application of the DBLOC method to the hydroxylation of camphor by cytochrome p450.

Authors:  Steven V Jerome; Thomas F Hughes; Richard A Friesner
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2.  Electrostatic environment of hemes in proteins: pK(a)s of hydroxyl ligands.

Authors:  Yifan Song; Junjun Mao; M R Gunner
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3.  Spin equilibrium and O₂-binding kinetics of Mycobacterium tuberculosis CYP51 with mutations in the histidine-threonine dyad.

Authors:  Gareth K Jennings; Anuja Modi; Justin E Elenewski; Caroline M Ritchie; Thuy Nguyen; Keith C Ellis; John C Hackett
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4.  The Cytochrome P450-Catalyzed Oxidative Rearrangement in the Final Step of Pentalenolactone Biosynthesis: Substrate Structure Determines Mechanism.

Authors:  Lian Duan; Gerwald Jogl; David E Cane
Journal:  J Am Chem Soc       Date:  2016-09-16       Impact factor: 15.419

5.  Structure and quantum chemical characterization of chloroperoxidase compound 0, a common reaction intermediate of diverse heme enzymes.

Authors:  Karin Kühnel; Etienne Derat; James Terner; Sason Shaik; Ilme Schlichting
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-26       Impact factor: 11.205

6.  The axial ligand effect of oxo-iron porphyrin catalysts. How does chloride compare to thiolate?

Authors:  Sam P de Visser
Journal:  J Biol Inorg Chem       Date:  2005-12-06       Impact factor: 3.358

7.  Noninnocent effect of axial ligand on the heme degradation process: a theoretical approach to hydrolysis pathway of verdoheme to biliverdin.

Authors:  Parisa R Jamaat; Nasser Safari; Mina Ghiasi; S Shahab-al-din Naghavi; Mansour Zahedi
Journal:  J Biol Inorg Chem       Date:  2007-10-23       Impact factor: 3.358

8.  Molecular recognition in Mn-catalyzed C-H oxidation. Reaction mechanism and origin of selectivity from a DFT perspective.

Authors:  David Balcells; Pamela Moles; James D Blakemore; Christophe Raynaud; Gary W Brudvig; Robert H Crabtree; Odile Eisenstein
Journal:  Dalton Trans       Date:  2009-06-17       Impact factor: 4.390

9.  Peripheral heme substituents control the hydrogen-atom abstraction chemistry in cytochromes P450.

Authors:  Victor Guallar; Mu-Hyun Baik; Stephen J Lippard; Richard A Friesner
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-27       Impact factor: 11.205

10.  Mapping protein electron transfer pathways with QM/MM methods.

Authors:  Victor Guallar; Frank Wallrapp
Journal:  J R Soc Interface       Date:  2008-12-06       Impact factor: 4.118

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