Literature DB >> 12676982

Evolution of an organophosphate-degrading enzyme: a comparison of natural and directed evolution.

H Yang1, P D Carr, S Yu McLoughlin, J W Liu, I Horne, X Qiu, C M J Jeffries, R J Russell, J G Oakeshott, D L Ollis.   

Abstract

Organophosphate-degrading enzyme from Agrobacterium radiobacter P230 (OPDA) is a recently discovered enzyme that degrades a broad range of organophosphates. It is very similar to OPH first isolated from Pseudomonas diminuta MG. Despite a high level of sequence identity, OPH and OPDA exhibit different substrate specificities. We report here the structure of OPDA and identify regions of the protein that are likely to give it a preference for substrates that have shorter alkyl substituents. Directed evolution was used to evolve a series of OPH mutants that had activities similar to those of OPDA. Mutants were selected for on the basis of their ability to degrade a number of substrates. The mutations tended to cluster in particular regions of the protein and in most cases, these regions were where OPH and OPDA had significant differences in their sequences.

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Year:  2003        PMID: 12676982     DOI: 10.1093/proeng/gzg013

Source DB:  PubMed          Journal:  Protein Eng        ISSN: 0269-2139


  38 in total

1.  Directed evolution of mammalian paraoxonases PON1 and PON3 for bacterial expression and catalytic specialization.

Authors:  Amir Aharoni; Leonid Gaidukov; Shai Yagur; Lilly Toker; Israel Silman; Dan S Tawfik
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-26       Impact factor: 11.205

Review 2.  Divergence and convergence in enzyme evolution: parallel evolution of paraoxonases from quorum-quenching lactonases.

Authors:  Mikael Elias; Dan S Tawfik
Journal:  J Biol Chem       Date:  2011-11-08       Impact factor: 5.157

Review 3.  Laboratory-directed protein evolution.

Authors:  Ling Yuan; Itzhak Kurek; James English; Robert Keenan
Journal:  Microbiol Mol Biol Rev       Date:  2005-09       Impact factor: 11.056

4.  The enzymatic basis for pesticide bioremediation.

Authors:  Colin Scott; Gunjan Pandey; Carol J Hartley; Colin J Jackson; Matthew J Cheesman; Matthew C Taylor; Rinku Pandey; Jeevan L Khurana; Mark Teese; Chris W Coppin; Kahli M Weir; Rakesh K Jain; Rup Lal; Robyn J Russell; John G Oakeshott
Journal:  Indian J Microbiol       Date:  2008-05-01       Impact factor: 2.461

5.  Anomalous scattering analysis of Agrobacterium radiobacter phosphotriesterase: the prominent role of iron in the heterobinuclear active site.

Authors:  Colin J Jackson; Paul D Carr; Hye-Kyung Kim; Jian-Wei Liu; Paul Herrald; Natasa Mitić; Gerhard Schenk; Clyde A Smith; David L Ollis
Journal:  Biochem J       Date:  2006-08-01       Impact factor: 3.857

6.  Enzymes for the homeland defense: optimizing phosphotriesterase for the hydrolysis of organophosphate nerve agents.

Authors:  Ping-Chuan Tsai; Nicholas Fox; Andrew N Bigley; Steven P Harvey; David P Barondeau; Frank M Raushel
Journal:  Biochemistry       Date:  2012-07-31       Impact factor: 3.162

7.  Cloning of a novel aldo-keto reductase gene from Klebsiella sp. strain F51-1-2 and its functional expression in Escherichia coli.

Authors:  Hong Jiang; Chao Yang; Hong Qu; Zheng Liu; Q S Fu; Chuanling Qiao
Journal:  Appl Environ Microbiol       Date:  2007-06-15       Impact factor: 4.792

8.  Enhanced activity and stability of organophosphorus hydrolase via interaction with an amphiphilic polymer.

Authors:  Minkyu Kim; Manos Gkikas; Aaron Huang; Jeon Woong Kang; Nisaraporn Suthiwangcharoen; Ramanathan Nagarajan; Bradley D Olsen
Journal:  Chem Commun (Camb)       Date:  2014-02-21       Impact factor: 6.222

9.  Conformational sampling, catalysis, and evolution of the bacterial phosphotriesterase.

Authors:  C J Jackson; J-L Foo; N Tokuriki; L Afriat; P D Carr; H-K Kim; G Schenk; D S Tawfik; D L Ollis
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-04       Impact factor: 11.205

10.  Altering the substrate specificity of organophosphorus hydrolase for enhanced hydrolysis of chlorpyrifos.

Authors:  Catherine Mee-Hie Cho; Ashok Mulchandani; Wilfred Chen
Journal:  Appl Environ Microbiol       Date:  2004-08       Impact factor: 4.792

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