Literature DB >> 25365793

Protocol for optimal quality and quantity pollen DNA isolation from honey samples.

Ralte Lalhmangaihi1, Souvik Ghatak2, Ramachandra Laha1, Guruswami Gurusubramanian3, Nachimuthu Senthil Kumar2.   

Abstract

The present study illustrates an optimized sample preparation method for an efficient DNA isolation from low quantities of honey samples. A conventional PCR-based method was validated, which potentially enables characterization of plant species from as low as 3 ml bee-honey samples. In the present study, an anionic detergent was used to lyse the hard outer pollen shell, and DTT was used for isolation of thiolated DNA, as it might facilitate protein digestion and assists in releasing the DNA into solution, as well as reduce cross-links between DNA and other biomolecules. Optimization of both the quantity of honey sample and time duration for DNA isolation was done during development of this method. With the use of this method, chloroplast DNA was successfully PCR amplified and sequenced from honey DNA samples.

Entities:  

Keywords:  bees; chloroplast DNA; polliniferous plants

Mesh:

Substances:

Year:  2014        PMID: 25365793      PMCID: PMC4211278          DOI: 10.7171/jbt.14-2504-001

Source DB:  PubMed          Journal:  J Biomol Tech        ISSN: 1524-0215


  6 in total

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Review 2.  Molecular analysis of predation: a review of best practice for DNA-based approaches.

Authors:  R A King; D S Read; M Traugott; W O C Symondson
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Review 3.  Molecular mechanisms of tolerance in tardigrades: new perspectives for preservation and stabilization of biological material.

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Journal:  Biotechnol Adv       Date:  2009 Jul-Aug       Impact factor: 14.227

4.  A DNA barcode for land plants.

Authors: 
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-30       Impact factor: 11.205

5.  Testing the reliability of genetic methods of species identification via simulation.

Authors:  Howard A Ross; Sumathi Murugan; Wai Lok Sibon Li
Journal:  Syst Biol       Date:  2008-04       Impact factor: 15.683

6.  Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding.

Authors:  Pierre Taberlet; Eric Coissac; François Pompanon; Ludovic Gielly; Christian Miquel; Alice Valentini; Thierry Vermat; Gérard Corthier; Christian Brochmann; Eske Willerslev
Journal:  Nucleic Acids Res       Date:  2006-12-14       Impact factor: 16.971

  6 in total
  4 in total

1.  Triplex real-time PCR for detection of Crithidia mellificae and Lotmaria passim in honey bees.

Authors:  Guang Xu; Evan Palmer-Young; Kim Skyrm; Timothy Daly; Martha Sylvia; Anne Averill; Stephen Rich
Journal:  Parasitol Res       Date:  2017-12-27       Impact factor: 2.289

2.  Investigation of the gut microbiome of Apis cerana honeybees from Vietnam.

Authors:  Bui Thi Thuy Duong; Nguyen Thi Kim Lien; Ha Thi Thu; Nguyen Thi Hoa; Pham Thi Lanh; Bo-Ram Yun; Mi-Sun Yoo; Yun Sang Cho; Dong Van Quyen
Journal:  Biotechnol Lett       Date:  2020-06-23       Impact factor: 2.461

3.  Meta-barcoding in combination with palynological inference is a potent diagnostic marker for honey floral composition.

Authors:  Rama Chandra Laha; Surajit De Mandal; Lalhmanghai Ralte; Laldinfeli Ralte; Nachimuthu Senthil Kumar; Guruswami Gurusubramanian; Ramalingam Satishkumar; Raja Mugasimangalam; Nagesh Aswathnarayana Kuravadi
Journal:  AMB Express       Date:  2017-06-24       Impact factor: 3.298

4.  Testing the effect of pollen exine rupture on metabarcoding with Illumina sequencing.

Authors:  Stephanie J Swenson; Birgit Gemeinholzer
Journal:  PLoS One       Date:  2021-02-02       Impact factor: 3.240

  4 in total

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