Literature DB >> 12668441

Simulation of MscL gating in a bilayer under stress.

Giorgio Colombo1, Siewert Jan Marrink, Alan E Mark.   

Abstract

The initial stages of the gating of the mechanoselective channel of large conductance from Mycobacterium tuberculosis have been studied in atomic detail using molecular dynamics simulation techniques. A truncated form of the protein complex embedded in a palmitoyloleoylphosphatidylcholine lipid bilayer and surrounded by explicit water was simulated under different pressure conditions to mimic the effects of tension and compression within the membrane on the protein. As a direct result of lateral tension being applied to the membrane, an increase in the tilt of a subset of the transmembrane helices was observed. This in turn led to the enlargement of the pore and the disruption of the hydrophobic gate consisting of residues Ile-14 and Val-21. The simulations suggest that opening occurs in a sequential staged process. Such a mechanism could explain the partial opening or staged conductance observed in patch-clamp experiments using related large conductance mechanosensitive channel complexes.

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Year:  2003        PMID: 12668441      PMCID: PMC1302799          DOI: 10.1016/S0006-3495(03)75038-3

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  30 in total

1.  Structural determinants of MscL gating studied by molecular dynamics simulations.

Authors:  J Gullingsrud; D Kosztin; K Schulten
Journal:  Biophys J       Date:  2001-05       Impact factor: 4.033

Review 2.  Structure and function of the bacterial mechanosensitive channel of large conductance.

Authors:  A J Oakley; B Martinac; M C Wilce
Journal:  Protein Sci       Date:  1999-10       Impact factor: 6.725

3.  Molecular dynamics simulations of wild-type and mutant forms of the Mycobacterium tuberculosis MscL channel.

Authors:  D E Elmore; D A Dougherty
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

4.  Structural models of the MscL gating mechanism.

Authors:  S Sukharev; S R Durell; H R Guy
Journal:  Biophys J       Date:  2001-08       Impact factor: 4.033

5.  Conformational pathways in the gating of Escherichia coli mechanosensitive channel.

Authors:  Yifei Kong; Yufeng Shen; Tiffany E Warth; Jianpeng Ma
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-23       Impact factor: 11.205

6.  K(+) versus Na(+) ions in a K channel selectivity filter: a simulation study.

Authors:  Indira H Shrivastava; D Peter Tieleman; Philip C Biggin; Mark S P Sansom
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

7.  Chemically charging the pore constriction opens the mechanosensitive channel MscL.

Authors:  K Yoshimura; A Batiza; C Kung
Journal:  Biophys J       Date:  2001-05       Impact factor: 4.033

8.  Correlating a protein structure with function of a bacterial mechanosensitive channel.

Authors:  P C Moe; G Levin; P Blount
Journal:  J Biol Chem       Date:  2000-10-06       Impact factor: 5.157

9.  Hydrophilicity of a single residue within MscL correlates with increased channel mechanosensitivity.

Authors:  K Yoshimura; A Batiza; M Schroeder; P Blount; C Kung
Journal:  Biophys J       Date:  1999-10       Impact factor: 4.033

10.  Physical principles underlying the transduction of bilayer deformation forces during mechanosensitive channel gating.

Authors:  Eduardo Perozo; Anna Kloda; D Marien Cortes; Boris Martinac
Journal:  Nat Struct Biol       Date:  2002-09
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  32 in total

1.  Membrane protein dynamics in different environments: simulation study of the outer membrane protein X in a lipid bilayer and in a micelle.

Authors:  Alexandra Choutko; Alice Glättli; César Fernández; Christian Hilty; Kurt Wüthrich; Wilfred F van Gunsteren
Journal:  Eur Biophys J       Date:  2010-10-05       Impact factor: 1.733

2.  Gating of the large mechanosensitive channel in situ: estimation of the spatial scale of the transition from channel population responses.

Authors:  Chien-Sung Chiang; Andriy Anishkin; Sergei Sukharev
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

3.  Molecular dynamics study of MscL interactions with a curved lipid bilayer.

Authors:  Grischa R Meyer; Justin Gullingsrud; Klaus Schulten; Boris Martinac
Journal:  Biophys J       Date:  2006-06-02       Impact factor: 4.033

Review 4.  Molecular dynamics simulations of proteins in lipid bilayers.

Authors:  James Gumbart; Yi Wang; Alekseij Aksimentiev; Emad Tajkhorshid; Klaus Schulten
Journal:  Curr Opin Struct Biol       Date:  2005-08       Impact factor: 6.809

5.  A finite element framework for studying the mechanical response of macromolecules: application to the gating of the mechanosensitive channel MscL.

Authors:  Yuye Tang; Guoxin Cao; Xi Chen; Jejoong Yoo; Arun Yethiraj; Qiang Cui
Journal:  Biophys J       Date:  2006-05-26       Impact factor: 4.033

6.  Electrostatic properties of the mechanosensitive channel of small conductance MscS.

Authors:  Marcos Sotomayor; Trudy A van der Straaten; Umberto Ravaioli; Klaus Schulten
Journal:  Biophys J       Date:  2006-03-02       Impact factor: 4.033

7.  Gating-associated conformational changes in the mechanosensitive channel MscL.

Authors:  Kenjiro Yoshimura; Jiro Usukura; Masahiro Sokabe
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-29       Impact factor: 11.205

8.  Mechanosensitive membrane channels in action.

Authors:  Serge Yefimov; Erik van der Giessen; Patrick R Onck; Siewert J Marrink
Journal:  Biophys J       Date:  2008-01-11       Impact factor: 4.033

9.  Molecular dynamics study of gating in the mechanosensitive channel of small conductance MscS.

Authors:  Marcos Sotomayor; Klaus Schulten
Journal:  Biophys J       Date:  2004-08-31       Impact factor: 4.033

10.  Molecular dynamics simulations of the lipid bilayer edge.

Authors:  Frank Y Jiang; Yann Bouret; James T Kindt
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

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