Literature DB >> 18192351

Mechanosensitive membrane channels in action.

Serge Yefimov1, Erik van der Giessen, Patrick R Onck, Siewert J Marrink.   

Abstract

The tension-driven gating process of MscL from Mycobacterium tuberculosis, Tb-MscL, has been addressed at near-atomic detail using coarse-grained molecular dynamics simulations. To perform the simulations, a novel coarse-grained peptide model based on a thermodynamic parameterization of the amino-acid side chains has been applied. Both the wild-type Tb-MscL and its gain-of-function mutant V21D embedded in a solvated lipid bilayer have been studied. To mimic hypoosmotic shock conditions, simulations were performed at increasing levels of membrane tension approaching the rupture threshold of the lipid bilayer. Both the wild-type and the mutant channel are found to undergo significant conformational changes in accordance with an irislike expansion mechanism, reaching a conducting state on a microsecond timescale. The most pronounced expansion of the pore has been observed for the V21D mutant, which is consistent with the experimentally shown gain-of-function phenotype of the V21D mutant.

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Year:  2008        PMID: 18192351      PMCID: PMC2275678          DOI: 10.1529/biophysj.107.119966

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  47 in total

1.  Membrane fusion: stalk model revisited.

Authors:  Vladislav S Markin; Joseph P Albanesi
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

2.  Molecular dynamics simulations of wild-type and mutant forms of the Mycobacterium tuberculosis MscL channel.

Authors:  D E Elmore; D A Dougherty
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

3.  A high-throughput screen for MscL channel activity and mutational phenotyping.

Authors:  J A Maurer; D A Dougherty
Journal:  Biochim Biophys Acta       Date:  2001-10-01

4.  Structural models of the MscL gating mechanism.

Authors:  S Sukharev; S R Durell; H R Guy
Journal:  Biophys J       Date:  2001-08       Impact factor: 4.033

5.  Conformational pathways in the gating of Escherichia coli mechanosensitive channel.

Authors:  Yifei Kong; Yufeng Shen; Tiffany E Warth; Jianpeng Ma
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-23       Impact factor: 11.205

6.  Release of thioredoxin via the mechanosensitive channel MscL during osmotic downshock of Escherichia coli cells.

Authors:  B Ajouz; C Berrier; A Garrigues; M Besnard; A Ghazi
Journal:  J Biol Chem       Date:  1998-10-09       Impact factor: 5.157

Review 7.  MscL: a mechanosensitive channel in Escherichia coli.

Authors:  S I Sukharev; P Blount; B Martinac; H R Guy; C Kung
Journal:  Soc Gen Physiol Ser       Date:  1996

8.  HOLE: a program for the analysis of the pore dimensions of ion channel structural models.

Authors:  O S Smart; J G Neduvelil; X Wang; B A Wallace; M S Sansom
Journal:  J Mol Graph       Date:  1996-12

9.  Tension-stabilized pores in giant vesicles: determination of pore size and pore line tension.

Authors:  D V Zhelev; D Needham
Journal:  Biochim Biophys Acta       Date:  1993-04-08

10.  Estimation of the pore size of the large-conductance mechanosensitive ion channel of Escherichia coli.

Authors:  C C Cruickshank; R F Minchin; A C Le Dain; B Martinac
Journal:  Biophys J       Date:  1997-10       Impact factor: 4.033

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  40 in total

Review 1.  Use of X-ray scattering to aid the design and delivery of membrane-active drugs.

Authors:  G Pabst; D Zweytick; R Prassl; K Lohner
Journal:  Eur Biophys J       Date:  2012-06-02       Impact factor: 1.733

2.  Direct simulation of protein-mediated vesicle fusion: lung surfactant protein B.

Authors:  Svetlana Baoukina; D Peter Tieleman
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

3.  Immobilization of the plug domain inside the SecY channel allows unrestricted protein translocation.

Authors:  Jelger A Lycklama A Nijeholt; Monica Bulacu; Siewert Jan Marrink; Arnold J M Driessen
Journal:  J Biol Chem       Date:  2010-05-19       Impact factor: 5.157

4.  Release of content through mechano-sensitive gates in pressurized liposomes.

Authors:  Martti Louhivuori; H Jelger Risselada; Erik van der Giessen; Siewert J Marrink
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-01       Impact factor: 11.205

5.  PRIMO: A Transferable Coarse-grained Force Field for Proteins.

Authors:  Parimal Kar; Srinivasa Murthy Gopal; Yi-Ming Cheng; Alexander Predeus; Michael Feig
Journal:  J Chem Theory Comput       Date:  2013-08-13       Impact factor: 6.006

6.  Conserved motifs in mechanosensitive channels MscL and MscS.

Authors:  Daniel Balleza; Froylan Gómez-Lagunas
Journal:  Eur Biophys J       Date:  2009-05-08       Impact factor: 1.733

7.  Gating mechanisms of mechanosensitive channels of large conductance, II: systematic study of conformational transitions.

Authors:  Yuye Tang; Jejoong Yoo; Arun Yethiraj; Qiang Cui; Xi Chen
Journal:  Biophys J       Date:  2008-04-04       Impact factor: 4.033

8.  The activation mode of the mechanosensitive ion channel, MscL, by lysophosphatidylcholine differs from tension-induced gating.

Authors:  Nobina Mukherjee; Mac Donald Jose; Jan Peter Birkner; Martin Walko; Helgi I Ingólfsson; Anna Dimitrova; Clément Arnarez; Siewert J Marrink; Armağan Koçer
Journal:  FASEB J       Date:  2014-06-23       Impact factor: 5.191

9.  Exploring peptide-membrane interactions with coarse-grained MD simulations.

Authors:  Benjamin A Hall; Alan P Chetwynd; Mark S P Sansom
Journal:  Biophys J       Date:  2011-04-20       Impact factor: 4.033

10.  Conformational flexibility of the leucine binding protein examined by protein domain coarse-grained molecular dynamics.

Authors:  Iwona Siuda; Lea Thøgersen
Journal:  J Mol Model       Date:  2013-09-19       Impact factor: 1.810

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