Literature DB >> 12666179

Structure and dynamics of nucleosomal DNA.

Uma M Muthurajan1, Young-Jun Park, R S Edayathumangalam, Robert K Suto, Srinivas Chakravarthy, Pamela N Dyer, Karolin Luger.   

Abstract

The last five years have seen exciting advances in our understanding of the structure of the nucleosome core particle, the basic repeating unit in all eukaryotic chromatin. A picture emerges in which nucleosomal DNA, while distorted and compacted fivefold by tight interactions with the histone octamer core, is at the same time highly dynamic and adaptable. Here, we summarize the salient features from recent structural studies of nucleosome core particles (both published and unpublished) that concern the structure and dynamics of nucleosomal DNA, and the nature of protein-DNA interactions. Current mechanisms for chromatin remodeling and nucleosome sliding are discussed in light of new structural evidence. Finally, techniques to study nucleosome stability and ultimately dynamics are introduced. Copyright 2003 Wiley Periodicals, Inc.

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Year:  2003        PMID: 12666179     DOI: 10.1002/bip.10317

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  16 in total

1.  Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions.

Authors:  Uma M Muthurajan; Yunhe Bao; Lawrence J Forsberg; Rajeswari S Edayathumangalam; Pamela N Dyer; Cindy L White; Karolin Luger
Journal:  EMBO J       Date:  2004-01-22       Impact factor: 11.598

2.  Molecular recognition of the nucleosomal "supergroove".

Authors:  Rajeswari S Edayathumangalam; Philipp Weyermann; Joel M Gottesfeld; Peter B Dervan; Karolin Luger
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-20       Impact factor: 11.205

3.  Structural characterization of the histone variant macroH2A.

Authors:  Srinivas Chakravarthy; Sampath Kumar Y Gundimella; Cecile Caron; Pierre-Yves Perche; John R Pehrson; Saadi Khochbin; Karolin Luger
Journal:  Mol Cell Biol       Date:  2005-09       Impact factor: 4.272

Review 4.  Dynamic nucleosomes.

Authors:  Karolin Luger
Journal:  Chromosome Res       Date:  2006       Impact factor: 5.239

5.  Effects of photochemically activated alkylating agents of the FR900482 family on chromatin.

Authors:  Vidya Subramanian; Pascal Ducept; Robert M Williams; Karolin Luger
Journal:  Chem Biol       Date:  2007-05

6.  Histone Sprocket Arginine Residues Are Important for Gene Expression, DNA Repair, and Cell Viability in Saccharomyces cerevisiae.

Authors:  Amelia J Hodges; Isaura J Gallegos; Marian F Laughery; Rithy Meas; Linh Tran; John J Wyrick
Journal:  Genetics       Date:  2015-05-12       Impact factor: 4.562

Review 7.  Getting down to the core of histone modifications.

Authors:  Antonia P M Jack; Sandra B Hake
Journal:  Chromosoma       Date:  2014-05-02       Impact factor: 4.316

Review 8.  Role of chromatin states in transcriptional memory.

Authors:  Sharmistha Kundu; Craig L Peterson
Journal:  Biochim Biophys Acta       Date:  2009-02-21

Review 9.  Structural dynamics of nucleosomes at single-molecule resolution.

Authors:  John S Choy; Tae-Hee Lee
Journal:  Trends Biochem Sci       Date:  2012-07-23       Impact factor: 13.807

10.  A cassette of N-terminal amino acids of histone H2B are required for efficient cell survival, DNA repair and Swi/Snf binding in UV irradiated yeast.

Authors:  Ronita Nag; McKenna Kyriss; John W Smerdon; John J Wyrick; Michael J Smerdon
Journal:  Nucleic Acids Res       Date:  2009-12-09       Impact factor: 16.971

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