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Literature DB >> 12663558

Chromatin immunoprecipitation reveals that the 180-bp satellite repeat is the key functional DNA element of Arabidopsis thaliana centromeres.

Kiyotaka Nagaki¹, Paul B Talbert, Cathy Xiaoyan Zhong, R Kelly Dawe, Steven Henikoff, Jiming Jiang.

Abstract

The centromeres of Arabidopsis thaliana chromosomes contain megabases of complex DNA consisting of numerous types of repetitive DNA elements. We developed a chromatin immunoprecipitation (ChIP) technique using an antibody against the centromeric H3 histone, HTR12, in Arabidopsis. ChIP assays showed that the 180-bp centromeric satellite repeat was precipitated with the antibody, suggesting that this repeat is the key component of the centromere/kinetochore complex in Arabidopsis.

Entities: Gene Species

Mesh：

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Year: 2003 PMID： 12663558 PMCID： PMC1462492

Source DB: PubMed Journal: Genetics ISSN： 0016-6731 Impact factor: 4.562

40 in total

Review 1. The plant kinetochore.

Authors: H G Yu; E N Hiatt; R K Dawe
Journal: Trends Plant Sci Date: 2000-12 Impact factor: 18.313

2. Complex mtDNA constitutes an approximate 620-kb insertion on Arabidopsis thaliana chromosome 2: implication of potential sequencing errors caused by large-unit repeats.

Authors: R M Stupar; J W Lilly; C D Town; Z Cheng; S Kaul; C R Buell; J Jiang
Journal: Proc Natl Acad Sci U S A Date: 2001-04-17 Impact factor: 11.205

Review 3. Determining centromere identity: cyclical stories and forking paths.

Authors: B A Sullivan; M D Blower; G H Karpen
Journal: Nat Rev Genet Date: 2001-08 Impact factor: 53.242

4. Genomic and genetic definition of a functional human centromere.

Authors: M G Schueler; A W Higgins; M K Rudd; K Gustashaw; H F Willard
Journal: Science Date: 2001-10-05 Impact factor: 47.728

Review 5. The centromere paradox: stable inheritance with rapidly evolving DNA.

Authors: S Henikoff; K Ahmad; H S Malik
Journal: Science Date: 2001-08-10 Impact factor: 47.728

6. Retrotransposon evolution in diverse plant genomes.

Authors: T Langdon; C Seago; M Mende; M Leggett; H Thomas; J W Forster; R N Jones; G Jenkins
Journal: Genetics Date: 2000-09 Impact factor: 4.562

7. A novel chromatin immunoprecipitation and array (CIA) analysis identifies a 460-kb CENP-A-binding neocentromere DNA.

Authors: A W Lo; D J Magliano; M C Sibson; P Kalitsis; J M Craig; K H Choo
Journal: Genome Res Date: 2001-03 Impact factor: 9.043

8. The size and sequence organization of the centromeric region of arabidopsis thaliana chromosome 5.

Authors: N Kumekawa; T Hosouchi; H Tsuruoka; H Kotani
Journal: DNA Res Date: 2000-12-31 Impact factor: 4.458

9. The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.

Authors: N Kumekawa; T Hosouchi; H Tsuruoka; H Kotani
Journal: DNA Res Date: 2001-12-31 Impact factor: 4.458

10. Centromeres are specialized replication domains in heterochromatin.

Authors: K Ahmad; S Henikoff
Journal: J Cell Biol Date: 2001-04-02 Impact factor: 10.539

126 in total

1. Distribution of retroelements in centromeres and neocentromeres of maize.

Authors: Rebecca J Mroczek; R Kelly Dawe
Journal: Genetics Date: 2003-10 Impact factor: 4.562

Review 2. Chromosomal dynamics of human neocentromere formation.

Authors: Peter E Warburton
Journal: Chromosome Res Date: 2004 Impact factor: 5.239

3. Structural features of the rice chromosome 4 centromere.

Authors: Yu Zhang; Yuchen Huang; Lei Zhang; Ying Li; Tingting Lu; Yiqi Lu; Qi Feng; Qiang Zhao; Zhukuan Cheng; Yongbiao Xue; Rod A Wing; Bin Han
Journal: Nucleic Acids Res Date: 2004-04-02 Impact factor: 16.971

4. Isolation of centromeric-tandem repetitive DNA sequences by chromatin affinity purification using a HaloTag7-fused centromere-specific histone H3 in tobacco.

Authors: Kiyotaka Nagaki; Fukashi Shibata; Asaka Kanatani; Kazunari Kashihara; Minoru Murata
Journal: Plant Cell Rep Date: 2011-12-07 Impact factor: 4.570

Review 5. Centromeres of filamentous fungi.

Authors: Kristina M Smith; Jonathan M Galazka; Pallavi A Phatale; Lanelle R Connolly; Michael Freitag
Journal: Chromosome Res Date: 2012-07 Impact factor: 5.239

6. Functional centromeres in Astragalus sinicus include a compact centromere-specific histone H3 and a 20-bp tandem repeat.

Authors: Ahmet L Tek; Kazunari Kashihara; Minoru Murata; Kiyotaka Nagaki
Journal: Chromosome Res Date: 2011-11-08 Impact factor: 5.239

Review 7. Epigenetics and its implications for plant biology. 1. The epigenetic network in plants.

Authors: R T Grant-Downton; H G Dickinson
Journal: Ann Bot Date: 2005-10-27 Impact factor: 4.357

8. Structural diversity and differential transcription of the patatin multicopy gene family during potato tuber development.

Authors: Robert M Stupar; Karen A Beaubien; Weiwei Jin; Junqi Song; Mi-Kyung Lee; Chengcang Wu; Hong-Bin Zhang; Bin Han; Jiming Jiang
Journal: Genetics Date: 2005-12-01 Impact factor: 4.562

9. In-depth sequence analysis of the tomato chromosome 12 centromeric region: identification of a large CAA block and characterization of pericentromere retrotranposons.

Authors: Tae-Jin Yang; Seunghee Lee; Song-Bin Chang; Yeisoo Yu; Hans de Jong; Rod A Wing
Journal: Chromosoma Date: 2005-06-17 Impact factor: 4.316

10. The centromeric regions of potato chromosomes contain megabase-sized tandem arrays of telomere-similar sequence.

Authors: Ahmet L Tek; Jiming Jiang
Journal: Chromosoma Date: 2004-07-16 Impact factor: 4.316