Literature DB >> 22065151

Functional centromeres in Astragalus sinicus include a compact centromere-specific histone H3 and a 20-bp tandem repeat.

Ahmet L Tek1, Kazunari Kashihara, Minoru Murata, Kiyotaka Nagaki.   

Abstract

The centromere plays an essential role for proper chromosome segregation during cell division and usually harbors long arrays of tandem repeated satellite DNA sequences. Although this function is conserved among eukaryotes, the sequences of centromeric DNA repeats are variable. Most of our understanding of functional centromeres, which are defined by localization of a centromere-specific histone H3 (CENH3) protein, comes from model organisms. The components of the functional centromere in legumes are poorly known. The genus Astragalus is a member of the legumes and bears the largest numbers of species among angiosperms. Therefore, we studied the components of centromeres in Astragalus sinicus. We identified the CenH3 homolog of A. sinicus, AsCenH3 that is the most compact in size among higher eukaryotes. A CENH3-based assay revealed the functional centromeric DNA sequences from A. sinicus, called CentAs. The CentAs repeat is localized in A. sinicus centromeres, and comprises an AT-rich tandem repeat with a monomer size of 20 nucleotides.

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Year:  2011        PMID: 22065151     DOI: 10.1007/s10577-011-9247-y

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  33 in total

Review 1.  Phylogenomics of the nucleosome.

Authors:  Harmit S Malik; Steven Henikoff
Journal:  Nat Struct Biol       Date:  2003-11

2.  The transcribed 165-bp CentO satellite is the major functional centromeric element in the wild rice species Oryza punctata.

Authors:  Wenli Zhang; Chuandeng Yi; Weidong Bao; Bin Liu; Jiajun Cui; Hengxiu Yu; Xiaofeng Cao; Minghong Gu; Min Liu; Zhukuan Cheng
Journal:  Plant Physiol       Date:  2005-08-19       Impact factor: 8.340

Review 3.  Centromeres put epigenetics in the driver's seat.

Authors:  R Kelly Dawe; Steven Henikoff
Journal:  Trends Biochem Sci       Date:  2006-10-30       Impact factor: 13.807

Review 4.  Legume comparative genomics: progress in phylogenetics and phylogenomics.

Authors:  Quentin Cronk; Isidro Ojeda; R Toby Pennington
Journal:  Curr Opin Plant Biol       Date:  2006-02-15       Impact factor: 7.834

Review 5.  Centromeres: long intergenic spaces with adaptive features.

Authors:  Lisa Kanizay; R Kelly Dawe
Journal:  Funct Integr Genomics       Date:  2009-05-12       Impact factor: 3.410

6.  Functional centromeres in soybean include two distinct tandem repeats and a retrotransposon.

Authors:  Ahmet L Tek; Kazunari Kashihara; Minoru Murata; Kiyotaka Nagaki
Journal:  Chromosome Res       Date:  2010-03-05       Impact factor: 5.239

7.  The rapidly evolving centromere-specific histone has stringent functional requirements in Arabidopsis thaliana.

Authors:  Maruthachalam Ravi; Pak N Kwong; Ron M G Menorca; Joel T Valencia; Joseph S Ramahi; Jodi L Stewart; Robert K Tran; Venkatesan Sundaresan; Luca Comai; Simon W-L Chan
Journal:  Genetics       Date:  2010-07-13       Impact factor: 4.562

8.  Chromatin immunoprecipitation cloning reveals rapid evolutionary patterns of centromeric DNA in Oryza species.

Authors:  Hye-Ran Lee; Wenli Zhang; Tim Langdon; Weiwei Jin; Huihuang Yan; Zhukuan Cheng; Jiming Jiang
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-22       Impact factor: 11.205

9.  High frequency of centromere inactivation resulting in stable dicentric chromosomes of maize.

Authors:  Fangpu Han; Jonathan C Lamb; James A Birchler
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-21       Impact factor: 11.205

10.  Differential localization of the centromere-specific proteins in the major centromeric satellite of Arabidopsis thaliana.

Authors:  Fukashi Shibata; Minoru Murata
Journal:  J Cell Sci       Date:  2004-05-25       Impact factor: 5.285

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  12 in total

1.  Immuno-cytogenetic manifestation of epigenetic chromatin modification marks in plants.

Authors:  Santosh Kumar Sharma; Maki Yamamoto; Yasuhiko Mukai
Journal:  Planta       Date:  2014-12-25       Impact factor: 4.116

2.  High allelic diversity of the centromere-specific histone H3 (CENH3) in the legume sainfoin (Onobrychis viciifolia).

Authors:  Ahmet L Tek; Sevim D Kara Öztürk
Journal:  Mol Biol Rep       Date:  2020-10-26       Impact factor: 2.316

3.  The CentO satellite confers translational and rotational phasing on cenH3 nucleosomes in rice centromeres.

Authors:  Tao Zhang; Paul B Talbert; Wenli Zhang; Yufeng Wu; Zujun Yang; Jorja G Henikoff; Steven Henikoff; Jiming Jiang
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-04       Impact factor: 11.205

4.  Molecular cytogenetic analysis and genomic organization of major DNA repeats in castor bean (Ricinus communis L.).

Authors:  O S Alexandrov; G I Karlov
Journal:  Mol Genet Genomics       Date:  2015-11-20       Impact factor: 3.291

5.  Chromosome dynamics visualized with an anti-centromeric histone H3 antibody in Allium.

Authors:  Kiyotaka Nagaki; Maki Yamamoto; Naoki Yamaji; Yasuhiko Mukai; Minoru Murata
Journal:  PLoS One       Date:  2012-12-07       Impact factor: 3.240

6.  Centromeres Off the Hook: Massive Changes in Centromere Size and Structure Following Duplication of CenH3 Gene in Fabeae Species.

Authors:  Pavel Neumann; Zuzana Pavlíková; Andrea Koblížková; Iva Fuková; Veronika Jedličková; Petr Novák; Jiří Macas
Journal:  Mol Biol Evol       Date:  2015-03-13       Impact factor: 16.240

7.  Repeat Composition of CenH3-chromatin and H3K9me2-marked heterochromatin in Sugar Beet (Beta vulgaris).

Authors:  Teresa Kowar; Falk Zakrzewski; Jiří Macas; Andrea Kobližková; Prisca Viehoever; Bernd Weisshaar; Thomas Schmidt
Journal:  BMC Plant Biol       Date:  2016-05-26       Impact factor: 4.215

8.  Simple and Complex Centromeric Satellites in Drosophila Sibling Species.

Authors:  Paul B Talbert; Sivakanthan Kasinathan; Steven Henikoff
Journal:  Genetics       Date:  2018-01-05       Impact factor: 4.562

9.  Characterization of centromeric histone H3 (CENH3) variants in cultivated and wild carrots (Daucus sp.).

Authors:  Frank Dunemann; Otto Schrader; Holger Budahn; Andreas Houben
Journal:  PLoS One       Date:  2014-06-02       Impact factor: 3.240

10.  Sunflower centromeres consist of a centromere-specific LINE and a chromosome-specific tandem repeat.

Authors:  Kiyotaka Nagaki; Keisuke Tanaka; Naoki Yamaji; Hisato Kobayashi; Minoru Murata
Journal:  Front Plant Sci       Date:  2015-10-31       Impact factor: 5.753

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