Literature DB >> 12657788

In-house measurement of the sulfur anomalous signal and its use for phasing.

Judit E Debreczeni1, Gábor Bunkóczi, Qingjun Ma, Heiko Blaser, George M Sheldrick.   

Abstract

Five test structures (orthorhombic and trigonal trypsin, cubic and rhombohedral insulin and thaumatin) have been solved by the SAD (single-wavelength anomalous diffraction) method using highly redundant data collected at 100 K with a CCD detector, rotating-anode generator and three-circle goniometer. The very weak anomalous scattering (primarily from sulfur) was sufficient to locate all the anomalous scatterers using the integrated direct and Patterson methods in SHELXD. These positions and occupancies were used without further refinement to estimate phases that were extended to native (in-house) resolution by the sphere of influence algorithm in SHELXE. The final map correlation coefficients relative to the anisotropically refined structures were in the range 0.81-0.97. The use of highly redundant medium-resolution laboratory data for sulfur-SAD phasing combined with high-resolution synchrotron native data for phase expansion and structure refinement clearly has considerable potential.

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Year:  2003        PMID: 12657788     DOI: 10.1107/s0907444903002646

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  18 in total

1.  Structure determination of an FMN reductase from Pseudomonas aeruginosa PA01 using sulfur anomalous signal.

Authors:  Rakhi Agarwal; Jeffrey B Bonanno; Stephen K Burley; Subramanyam Swaminathan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-03-18

2.  Crystallization and preliminary X-ray characterization of the Bacillus amyloliquefaciens YwrO enzyme.

Authors:  Majed M AbuKhader; John Heap; Cristina I De Matteis; Stephen W Doughty; Nigel Minton; Max Paoli
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-08-10

3.  In-house zinc SAD phasing at Cu Kα edge.

Authors:  Min-Kyu Kim; Sangmin Lee; Young Jun An; Chang-Sook Jeong; Chang-Jun Ji; Jin-Won Lee; Sun-Shin Cha
Journal:  Mol Cells       Date:  2013-05-18       Impact factor: 5.034

4.  Structure of Ptr ToxA: an RGD-containing host-selective toxin from Pyrenophora tritici-repentis.

Authors:  Ganapathy N Sarma; Viola A Manning; Lynda M Ciuffetti; P Andrew Karplus
Journal:  Plant Cell       Date:  2005-10-07       Impact factor: 11.277

5.  S-SAD phasing study of death receptor 6 and its solution conformation revealed by SAXS.

Authors:  Heng Ru; Lixia Zhao; Wei Ding; Lianying Jiao; Neil Shaw; Wenguang Liang; Liguo Zhang; Li-Wei Hung; Naohiro Matsugaki; Soichi Wakatsuki; Zhi-Jie Liu
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-04-17

Review 6.  Assessing and maximizing data quality in macromolecular crystallography.

Authors:  P Andrew Karplus; Kay Diederichs
Journal:  Curr Opin Struct Biol       Date:  2015-07-24       Impact factor: 6.809

7.  Insights from soft X-rays: the chlorine and sulfur sub-structures of a CK2alpha/DRB complex.

Authors:  Jennifer Raaf; Olaf-Georg Issinger; Karsten Niefind
Journal:  Mol Cell Biochem       Date:  2008-07-08       Impact factor: 3.396

8.  Squeezing the most from every crystal: the fine details of data collection.

Authors:  Tobias Krojer; Ashley C W Pike; Frank von Delft
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-06-18

9.  The use of a mini-κ goniometer head in macromolecular crystallography diffraction experiments.

Authors:  Sandor Brockhauser; Raimond B G Ravelli; Andrew A McCarthy
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-06-15

10.  Structural and functional analysis of the CspB protease required for Clostridium spore germination.

Authors:  Chloe M Adams; Brian E Eckenroth; Emily E Putnam; Sylvie Doublié; Aimee Shen
Journal:  PLoS Pathog       Date:  2013-02-07       Impact factor: 6.823

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