Literature DB >> 12651726

Gene expression data preprocessing.

J Herrero1, R Díaz-Uriarte, J Dopazo.   

Abstract

We present an interactive web tool for preprocessing microarray gene expression data. It analyses the data, suggests the most appropriate transformations and proceeds with them after user agreement. The normal preprocessing steps include scale transformations, management of missing values, replicate handling, flat pattern filtering and pattern standardization and they are required before performing any pattern analysis. The processed data set can be sent to other pattern analysis tools.

Mesh:

Year:  2003        PMID: 12651726     DOI: 10.1093/bioinformatics/btg040

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  16 in total

1.  GEPAS: A web-based resource for microarray gene expression data analysis.

Authors:  Javier Herrero; Fátima Al-Shahrour; Ramón Díaz-Uriarte; Alvaro Mateos; Juan M Vaquerizas; Javier Santoyo; Joaquín Dopazo
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

2.  New challenges in gene expression data analysis and the extended GEPAS.

Authors:  Javier Herrero; Juan M Vaquerizas; Fátima Al-Shahrour; Lucía Conde; Alvaro Mateos; Javier Santoyo Ramón Díaz-Uriarte; Joaquín Dopazo
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

3.  A semantic analysis of the annotations of the human genome.

Authors:  Purvesh Khatri; Bogdan Done; Archana Rao; Arina Done; Sorin Draghici
Journal:  Bioinformatics       Date:  2005-06-14       Impact factor: 6.937

Review 4.  Bioinformatics and cancer: an essential alliance.

Authors:  Joaquín Dopazo
Journal:  Clin Transl Oncol       Date:  2006-06       Impact factor: 3.405

5.  Investigating multiple dysregulated pathways in rheumatoid arthritis based on pathway interaction network.

Authors:  Xian-Dong Song; Xian-Xu Song; Gui-Bo Liu; Chun-Hui Ren; Yuan-Bo Sun; Ke-Xin Liu; Bo Liu; Shuang Liang; Zhu Zhu
Journal:  J Genet       Date:  2018-03       Impact factor: 1.166

6.  Predicting novel human gene ontology annotations using semantic analysis.

Authors:  Bogdan Done; Purvesh Khatri; Arina Done; Sorin Drăghici
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2010 Jan-Mar       Impact factor: 3.710

7.  UFFizi: a generic platform for ranking informative features.

Authors:  Assaf Gottlieb; Roy Varshavsky; Michal Linial; David Horn
Journal:  BMC Bioinformatics       Date:  2010-06-03       Impact factor: 3.169

8.  Combining Shapley value and statistics to the analysis of gene expression data in children exposed to air pollution.

Authors:  Stefano Moretti; Danitsja van Leeuwen; Hans Gmuender; Stefano Bonassi; Joost van Delft; Jos Kleinjans; Fioravante Patrone; Domenico Franco Merlo
Journal:  BMC Bioinformatics       Date:  2008-09-02       Impact factor: 3.169

9.  Changes in the peripheral blood transcriptome associated with occupational benzene exposure identified by cross-comparison on two microarray platforms.

Authors:  Cliona M McHale; Luoping Zhang; Qing Lan; Guilan Li; Alan E Hubbard; Matthew S Forrest; Roel Vermeulen; Jinsong Chen; Min Shen; Stephen M Rappaport; Songnian Yin; Martyn T Smith; Nathaniel Rothman
Journal:  Genomics       Date:  2009-01-20       Impact factor: 5.736

10.  Zirconium oxide regulates RNA interfering of osteoblast-like cells.

Authors:  Annalisa Palmieri; Furio Pezzetti; Giorgio Brunelli; Ilaria Zollino; Lorenzo Lo Muzio; Marcella Martinelli; Luca Scapoli; Marzia Arlotti; Elena Masiero; Francesco Carinci
Journal:  J Mater Sci Mater Med       Date:  2008-02-06       Impact factor: 3.896

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.