Literature DB >> 12647033

Gating models of the anomalous mole-fraction effect of single-channel current in Chara.

U P Hansen1, O Cakan, M Abshagen-Keunecke, A Farokhi.   

Abstract

The dependence of single-channel current on the Tl+/K+ mole fraction exhibiting a minimum at [Tl+]/[K+] of about 1:15 is proportional to open probability in bursts. Five models are suggested to explain modulation of gating by the Tl+/K+ ratio. Three models start from a channel with 4 identical subunits, each with an allosteric binding site for K+ or Tl+. In the first model, ion binding is directly observable as a transition from one Markov state to another. This model can explain the dependence of the apparent single-channel current on Tl+ concentrations. However, the predicted linear dependence on ion concentrations of the apparent rate constants was not observed in measurements in 25 or 250 mM KNO3 and 250 mM Tl NO3. The second model can overcome this problem by introducing saturation kinetics for ion binding. In the third model, gating is caused by inherent vibrations of the protein, and the rate constants of the related transitions depend on the occupation of the allosteric sites. The fourth model is based on the foot-in-the-door approach with the essential feature that two K+ ions in the selectivity filter are necessary to keep the pore radius suitable for K+ ions. The fifth model is also a foot-in-the-door model, but non-Markovian because, similar to model 3, it is assumed that the conformation of the protein (and thus the rate constants of the Markov model of the time series) depends on the force exerted by the temporal average over the states of a Markov model of ion occupation. These ions may reside in the pore itself or outside.

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Year:  2003        PMID: 12647033     DOI: 10.1007/s00232-002-1063-z

Source DB:  PubMed          Journal:  J Membr Biol        ISSN: 0022-2631            Impact factor:   1.843


  14 in total

1.  Distributions-per-level: a means of testing level detectors and models of patch-clamp data.

Authors:  I Schröder; T Huth; V Suitchmezian; J Jarosik; S Schnell; U P Hansen
Journal:  J Membr Biol       Date:  2004-01-01       Impact factor: 1.843

Review 2.  How to resolve microsecond current fluctuations in single ion channels: the power of beta distributions.

Authors:  Indra Schroeder
Journal:  Channels (Austin)       Date:  2015       Impact factor: 2.581

3.  A subsequent fit of time series and amplitude histogram of patch-clamp records reveals rate constants up to 1 per microsecond.

Authors:  I Schröder; P Harlfinger; T Huth; U P Hansen
Journal:  J Membr Biol       Date:  2005-01       Impact factor: 1.843

4.  The power of two-dimensional dwell-time analysis for model discrimination, temporal resolution, multichannel analysis and level detection.

Authors:  Tobias Huth; Indra Schroeder; Ulf-Peter Hansen
Journal:  J Membr Biol       Date:  2007-06-06       Impact factor: 1.843

5.  Using a five-state model for fitting amplitude histograms from MaxiK channels: beta-distributions reveal more than expected.

Authors:  Indra Schroeder; Ulf-Peter Hansen
Journal:  Eur Biophys J       Date:  2009-07-21       Impact factor: 1.733

6.  Interference of shot noise of open-channel current with analysis of fast gating: patchers do not (Yet) have to care.

Authors:  Indra Schroeder; Ulf-Peter Hansen
Journal:  J Membr Biol       Date:  2009-06-24       Impact factor: 1.843

7.  Four-mode gating model of fast inactivation of sodium channel Nav1.2a.

Authors:  Tobias Huth; Johann Schmidtmayer; Christian Alzheimer; Ulf-Peter Hansen
Journal:  Pflugers Arch       Date:  2008-04-19       Impact factor: 3.657

8.  Anion currents in yeast K+ transporters (TRK) characterize a structural homologue of ligand-gated ion channels.

Authors:  Alberto Rivetta; Teruo Kuroda; Clifford Slayman
Journal:  Pflugers Arch       Date:  2011-05-10       Impact factor: 3.657

9.  Saturation and microsecond gating of current indicate depletion-induced instability of the MaxiK selectivity filter.

Authors:  Indra Schroeder; Ulf-Peter Hansen
Journal:  J Gen Physiol       Date:  2007-07       Impact factor: 4.086

10.  Fast and slow gating are inherent properties of the pore module of the K+ channel Kcv.

Authors:  Alessandra Abenavoli; Mattia Lorenzo DiFrancesco; Indra Schroeder; Svetlana Epimashko; Sabrina Gazzarrini; Ulf Peter Hansen; Gerhard Thiel; Anna Moroni
Journal:  J Gen Physiol       Date:  2009-09       Impact factor: 4.086

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