Literature DB >> 12641476

The Southeast Collaboratory for Structural Genomics: a high-throughput gene to structure factory.

Michael W W Adams1, Harry A Dailey, Lawrence J DeLucas, Ming Luo, James H Prestegard, John P Rose, Bi-Cheng Wang.   

Abstract

The Southeast Collaboratory for Structural Genomics consists of four working groups. The protein production group supplies/develops high-output production of Pyrococcus furiosus, Caenorhabditis elegans, and selected human proteins. The X-ray crystallography group conducts high-throughput structure production in parallel with production-related research/development in nanocrystallization robotics, capillary crystallization cassette, synchrotron/home X-ray instrumentation, sample mounting robotics, data processing and pipelined structure analysis, combined refinement/validation protocols, and direct use of unlabeled native crystals (Direct Crystallography). The NMR group emphasizes/develops sample screening and backbone structure determination from residual dipolar coupling data. The bioinformatics group implements/develops local database interfaces, pipelined sequence/structure information search/updates, and database/bioinformatics toolkits.

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Year:  2003        PMID: 12641476     DOI: 10.1021/ar0101382

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  29 in total

1.  Protein production and crystallization at SECSG -- an overview.

Authors:  Bi-Cheng Wang; Michael W W Adams; Harry Dailey; Larry DeLucas; Ming Luo; John Rose; Robert Bunzel; Tamara Dailey; Jeff Habel; Peter Horanyi; Francis E Jenney; Irina Kataeva; Han-Seung Lee; Songlin Li; Ting Li; Dawei Lin; Zhi-Jie Liu; Chi-Hao Luan; Michael Mayer; Lisa Nagy; M Gary Newton; Joseph Ng; Farris L Poole; Ashit Shah; Claudia Shah; Frank J Sugar; Hao Xu
Journal:  J Struct Funct Genomics       Date:  2005

2.  Salvaging Pyrococcus furiosus protein targets at SECSG.

Authors:  Zhi-Jie Liu; Ashit K Shah; Jeff E Habel; Joseph D Ng; Irina Kataeva; Hao Xu; Peter Horanyi; Hua Yang; Jessie Chang; Min Zhao; Lei Huang; Sue Chang; Wolfram Tempel; Lirong Chen; Weihong Zhou; Doowon Lee; Dawei Lin; Hua Zhang; M Gary Newton; John Rose; Bi-Cheng Wang
Journal:  J Struct Funct Genomics       Date:  2005

3.  Backbone solution structures of proteins using residual dipolar couplings: application to a novel structural genomics target.

Authors:  H Valafar; K L Mayer; C M Bougault; P D LeBlond; F E Jenney; P S Brereton; M W W Adams; J H Prestegard
Journal:  J Struct Funct Genomics       Date:  2004

4.  Determination of protein backbone structures from residual dipolar couplings.

Authors:  J H Prestegard; K L Mayer; H Valafar; G C Benison
Journal:  Methods Enzymol       Date:  2005       Impact factor: 1.600

Review 5.  Using nanoliter plugs in microfluidics to facilitate and understand protein crystallization.

Authors:  Bo Zheng; Cory J Gerdts; Rustem F Ismagilov
Journal:  Curr Opin Struct Biol       Date:  2005-10       Impact factor: 6.809

6.  Defining genes in the genome of the hyperthermophilic archaeon Pyrococcus furiosus: implications for all microbial genomes.

Authors:  Farris L Poole; Brian A Gerwe; Robert C Hopkins; Gerrit J Schut; Michael V Weinberg; Francis E Jenney; Michael W W Adams
Journal:  J Bacteriol       Date:  2005-11       Impact factor: 3.490

7.  A test of enhancing model accuracy in high-throughput crystallography.

Authors:  W Bryan Arendall; Wolfram Tempel; Jane S Richardson; Weihong Zhou; Shuren Wang; Ian W Davis; Zhi-Jie Liu; John P Rose; W Michael Carson; Ming Luo; David C Richardson; Bi-Cheng Wang
Journal:  J Struct Funct Genomics       Date:  2005

Review 8.  The impact of extremophiles on structural genomics (and vice versa).

Authors:  Francis E Jenney; Michael W W Adams
Journal:  Extremophiles       Date:  2007-06-13       Impact factor: 2.395

9.  Owner controlled data exchange in nutrigenomic collaborations: the NuGO information network.

Authors:  Ulrich Harttig; Anthony J Travis; Philippe Rocca-Serra; Marten Renkema; Ben van Ommen; Heiner Boeing
Journal:  Genes Nutr       Date:  2009-04-30       Impact factor: 5.523

10.  High-throughput expression of C. elegans proteins.

Authors:  Chi-Hao Luan; Shihong Qiu; James B Finley; Mike Carson; Rita J Gray; Wenying Huang; David Johnson; Jun Tsao; Jérôme Reboul; Philippe Vaglio; David E Hill; Marc Vidal; Lawrence J Delucas; Ming Luo
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

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