Literature DB >> 12614617

Equilibrium and kinetics of the allosteric transition of GroEL studied by solution X-ray scattering and fluorescence spectroscopy.

Tomonao Inobe1, Munehito Arai, Masaharu Nakao, Kazuki Ito, Kiyoto Kamagata, Tadashi Makio, Yoshiyuki Amemiya, Hiroshi Kihara, Kunihiro Kuwajima.   

Abstract

We have studied the ATP-induced allosteric structural transition of GroEL using small angle X-ray scattering and fluorescence spectroscopy in combination with a stopped-flow technique. With X-ray scattering one can clearly distinguish the three allosteric states of GroEL, and the kinetics of the transition of GroEL induced by 85 microM ATP have been observed directly by stopped-flow X-ray scattering for the first time. The rate constant has been found to be 3-5s(-1) at 5 degrees C, indicating that this process corresponds to the second phase of the ATP-induced kinetics of tryptophan-inserted GroEL measured by stopped-flow fluorescence. Based on the ATP concentration dependence of the fluorescence kinetics, we conclude that the first phase represents bimolecular non-cooperative binding of ATP to GroEL with a bimolecular rate constant of 5.8 x 10(5)M(-1)s(-1) at 25 degrees C. Considering the electrostatic repulsion between negatively charged GroEL (-18 of the net charge per monomer at pH 7.5) and ATP, the rate constant is consistent with a diffusion-controlled bimolecular process. The ATP-induced fluorescence kinetics (the first and second phases) at various ATP concentrations (< 400 microM) occur before ATP hydrolysis by GroEL takes place and are well explained by a kinetic allosteric model, which is a combination of the conventional transition state theory and the Monod-Wyman-Changeux model, and we have successfully evaluated the equilibrium and kinetic parameters of the allosteric transition, including the binding constant of ATP in the transition state of GroEL.

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Year:  2003        PMID: 12614617     DOI: 10.1016/s0022-2836(03)00087-1

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  9 in total

1.  Denaturation and reassembly of chaperonin GroEL studied by solution X-ray scattering.

Authors:  Munehito Arai; Tomonao Inobe; Kosuke Maki; Teikichi Ikura; Hiroshi Kihara; Yoshiyuki Amemiya; Kunihiro Kuwajima
Journal:  Protein Sci       Date:  2003-04       Impact factor: 6.725

2.  The unfolding action of GroEL on a protein substrate.

Authors:  Arjan van der Vaart; Jianpeng Ma; Martin Karplus
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

3.  Ionic interactions at both inter-ring contact sites of GroEL are involved in transmission of the allosteric signal: a time-resolved infrared difference study.

Authors:  Begoña Sot; Fritzthof von Germar; Werner Mäntele; Jose María Valpuesta; Stefka G Taneva; Arturo Muga
Journal:  Protein Sci       Date:  2005-08-04       Impact factor: 6.725

4.  Asymmetry of the GroEL-GroES complex under physiological conditions as revealed by small-angle x-ray scattering.

Authors:  Tomonao Inobe; Kazunobu Takahashi; Kosuke Maki; Sawako Enoki; Kiyoto Kamagata; Akio Kadooka; Munehito Arai; Kunihiro Kuwajima
Journal:  Biophys J       Date:  2007-11-02       Impact factor: 4.033

5.  Kinetic analysis of conformational changes of GroEL based on the fluorescence of tyrosine 506.

Authors:  Kazuhiko Hosono; Taro Ueno; Hideki Taguchi; Fumihiro Motojima; Tamotsu Zako; Masasuke Yoshida; Takashi Funatsu
Journal:  Protein J       Date:  2008-12       Impact factor: 2.371

Review 6.  Assessing heterogeneity in oligomeric AAA+ machines.

Authors:  Tatyana A Sysoeva
Journal:  Cell Mol Life Sci       Date:  2016-09-26       Impact factor: 9.261

Review 7.  Analytical methods for kinetic studies of biological interactions: A review.

Authors:  Xiwei Zheng; Cong Bi; Zhao Li; Maria Podariu; David S Hage
Journal:  J Pharm Biomed Anal       Date:  2015-01-27       Impact factor: 3.935

8.  Statistical mechanics of Monod-Wyman-Changeux (MWC) models.

Authors:  Sarah Marzen; Hernan G Garcia; Rob Phillips
Journal:  J Mol Biol       Date:  2013-03-14       Impact factor: 5.469

9.  Nucleotide-induced conformational changes of tetradecameric GroEL mapped by H/D exchange monitored by FT-ICR mass spectrometry.

Authors:  Qian Zhang; Jin Chen; Kunihiro Kuwajima; Hui-Min Zhang; Feng Xian; Nicolas L Young; Alan G Marshall
Journal:  Sci Rep       Date:  2013-02-13       Impact factor: 4.379

  9 in total

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