Literature DB >> 12612607

Growth-rate dependent RNA polyadenylation in Escherichia coli.

Jacek Jasiecki1, Grzegorz Wegrzyn.   

Abstract

RNA polyadenylation occurs not only in eukaryotes but also in bacteria. In prokaryotes, polyadenylated RNA molecules are usually degraded more efficiently than non-modified transcripts. Here we demonstrate that two transcripts, which were shown previously to be substrates for poly(A) polymerase I (PAP I), Escherichia coli lpp messenger RNA and bacteriophage lambda oop RNA, are polyadenylated more efficiently in slowly growing bacteria than in rapidly growing bacteria. Intracellular levels of PAP I varied in inverse proportion to bacterial growth rate. Moreover, transcription from a promoter for the pcnB gene (encoding PAP I) was shown to be more efficient under conditions of low bacterial growth rates. We conclude that efficiency of RNA polyadenylation in E. coli is higher in slowly growing bacteria because of more efficient expression of the pcnB gene. This may allow regulation of the stability of certain transcripts (those subjected to PAP I-dependent polyadenylation) in response to various growth conditions.

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Year:  2003        PMID: 12612607      PMCID: PMC1315831          DOI: 10.1038/sj.embor.embor733

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  34 in total

1.  Residual polyadenylation in poly(A) polymerase I (pcnB ) mutants of Escherichia coli does not result from the activity encoded by the f310 gene.

Authors:  B K Mohanty; S R Kushner
Journal:  Mol Microbiol       Date:  1999-12       Impact factor: 3.501

2.  Analysis of the function of Escherichia coli poly(A) polymerase I in RNA metabolism.

Authors:  B K Mohanty; S R Kushner
Journal:  Mol Microbiol       Date:  1999-12       Impact factor: 3.501

3.  Unpaired terminal nucleotides and 5' monophosphorylation govern 3' polyadenylation by Escherichia coli poly(A) polymerase I.

Authors:  Y Feng; S N Cohen
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

Review 4.  Degradation of mRNA in bacteria: emergence of ubiquitous features.

Authors:  P Régnier; C M Arraiano
Journal:  Bioessays       Date:  2000-03       Impact factor: 4.345

Review 5.  Emerging features of mRNA decay in bacteria.

Authors:  D A Steege
Journal:  RNA       Date:  2000-08       Impact factor: 4.942

6.  Polyadenylylation destabilizes the rpsO mRNA of Escherichia coli.

Authors:  E Hajnsdorf; F Braun; J Haugel-Nielsen; P Régnier
Journal:  Proc Natl Acad Sci U S A       Date:  1995-04-25       Impact factor: 11.205

7.  Characterization of the E.coli poly(A) polymerase: nucleotide specificity, RNA-binding affinities and RNA structure dependence.

Authors:  S Yehudai-Resheff; G Schuster
Journal:  Nucleic Acids Res       Date:  2000-03-01       Impact factor: 16.971

8.  ClpP/ClpX-mediated degradation of the bacteriophage lambda O protein and regulation of lambda phage and lambda plasmid replication.

Authors:  A Wegrzyn; A Czyz; M Gabig; G Wegrzyn
Journal:  Arch Microbiol       Date:  2000 Jul-Aug       Impact factor: 2.552

9.  Polynucleotide phosphorylase, RNase II and RNase E play different roles in the in vivo modulation of polyadenylation in Escherichia coli.

Authors:  B K Mohanty; S R Kushner
Journal:  Mol Microbiol       Date:  2000-05       Impact factor: 3.501

10.  RNA degradation in Escherichia coli regulated by 3' adenylation and 5' phosphorylation.

Authors:  F Xu; S N Cohen
Journal:  Nature       Date:  1995-03-09       Impact factor: 49.962

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  20 in total

1.  Evidence for polyadenylated mRNA in Pseudomonas aeruginosa.

Authors:  Senthil Selvan Saravanamuthu; Franz von Götz; Prabhakar Salunkhe; Rathinam Chozhavendan; Robert Geffers; Jan Buer; Burkhard Tümmler; Ivo Steinmetz
Journal:  J Bacteriol       Date:  2004-10       Impact factor: 3.490

2.  Inhibition of development of Shiga toxin-converting bacteriophages by either treatment with citrate or amino acid starvation.

Authors:  Bożena Nejman-Faleńczyk; Piotr Golec; Monika Maciąg; Alicja Wegrzyn; Grzegorz Węgrzyn
Journal:  Foodborne Pathog Dis       Date:  2011-11-02       Impact factor: 3.171

Review 3.  RNA polyadenylation and its consequences in prokaryotes.

Authors:  Eliane Hajnsdorf; Vladimir R Kaberdin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-11-05       Impact factor: 6.237

4.  Modulation of mRNA stability participates in stationary-phase-specific expression of ribosome modulation factor.

Authors:  Toshiko Aiso; Hideji Yoshida; Akira Wada; Reiko Ohki
Journal:  J Bacteriol       Date:  2005-03       Impact factor: 3.490

Review 5.  Mechanisms of physiological regulation of RNA synthesis in bacteria: new discoveries breaking old schemes.

Authors:  Agnieszka Szalewska-Palasz; Grzegorz Wegrzyn; Alicja Wegrzyn
Journal:  J Appl Genet       Date:  2007       Impact factor: 3.240

6.  The poly(A)-dependent degradation pathway of rpsO mRNA is primarily mediated by RNase R.

Authors:  José M Andrade; Eliane Hajnsdorf; Philippe Régnier; Cecília M Arraiano
Journal:  RNA       Date:  2008-12-22       Impact factor: 4.942

Review 7.  Bacterial transcriptomics: what is beyond the RNA horiz-ome?

Authors:  Marc Güell; Eva Yus; Maria Lluch-Senar; Luis Serrano
Journal:  Nat Rev Microbiol       Date:  2011-08-12       Impact factor: 60.633

Review 8.  The interplay of Hfq, poly(A) polymerase I and exoribonucleases at the 3' ends of RNAs resulting from Rho-independent termination: A tentative model.

Authors:  Philippe Régnier; Eliane Hajnsdorf
Journal:  RNA Biol       Date:  2013-02-07       Impact factor: 4.652

9.  Time-dependent effects of transcription- and translation-halting drugs on the spatial distributions of the Escherichia coli chromosome and ribosomes.

Authors:  Somenath Bakshi; Heejun Choi; Jagannath Mondal; James C Weisshaar
Journal:  Mol Microbiol       Date:  2014-10-22       Impact factor: 3.501

10.  Transcription regulation of the Escherichia coli pcnB gene coding for poly(A) polymerase I: roles of ppGpp, DksA and sigma factors.

Authors:  Beata Nadratowska-Wesołowska; Monika Słomińska-Wojewódzka; Robert Łyzeń; Alicja Wegrzyn; Agnieszka Szalewska-Pałasz; Grzegorz Wegrzyn
Journal:  Mol Genet Genomics       Date:  2010-08-12       Impact factor: 3.291

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