Literature DB >> 10684583

Degradation of mRNA in bacteria: emergence of ubiquitous features.

P Régnier1, C M Arraiano.   

Abstract

The amount of a messenger RNA available for protein synthesis depends on the efficiency of its transcription and stability. The mechanisms of degradation that determine the stability of mRNAs in bacteria have been investigated extensively during the last decade and have begun to be better understood. Several endo- and exoribonucleases involved in the mRNA metabolism have been characterized as well as structural features of mRNA which account for its stability have been determined. The most important recent developments have been the discovery that the degradosome-a multiprotein complex containing an endoribonuclease (RNase E), an exoribonuclease (polynucleotide phosphorylase), and a DEAD box helicase (RhlB)-has a central role in mRNA degradation and that oligo(A) tails synthesized by poly(A) polymerase facilitate the degradation of mRNAs and RNA fragments. Moreover, the phosphorylation status and the base pairing of 5' extremities, together with 3' secondary structures of transcriptional terminators, contribute to the stability of primary transcripts. Degradation of mRNAs can follow several independent pathways. Interestingly, poly(A) tails and multienzyme complexes also control the stability and the degradation of eukaryotic mRNAs. These discoveries have led to the development of refined models of mRNA degradation. Copyright 2000 John Wiley & Sons, Inc.

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Year:  2000        PMID: 10684583     DOI: 10.1002/(SICI)1521-1878(200003)22:3<235::AID-BIES5>3.0.CO;2-2

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  65 in total

1.  Cleavage of poly(A) tails on the 3'-end of RNA by ribonuclease E of Escherichia coli.

Authors:  A P Walsh; M R Tock; M H Mallen; V R Kaberdin; A von Gabain; K J McDowall
Journal:  Nucleic Acids Res       Date:  2001-05-01       Impact factor: 16.971

2.  RNase II removes the oligo(A) tails that destabilize the rpsO mRNA of Escherichia coli.

Authors:  P E Marujo; E Hajnsdorf; J Le Derout; R Andrade; C M Arraiano; P Régnier
Journal:  RNA       Date:  2000-08       Impact factor: 4.942

3.  A mRNA-based thermosensor controls expression of rhizobial heat shock genes.

Authors:  A Nocker; T Hausherr; S Balsiger; N P Krstulovic; H Hennecke; F Narberhaus
Journal:  Nucleic Acids Res       Date:  2001-12-01       Impact factor: 16.971

4.  RNA quality control: degradation of defective transfer RNA.

Authors:  Zhongwei Li; Stephan Reimers; Shilpa Pandit; Murray P Deutscher
Journal:  EMBO J       Date:  2002-03-01       Impact factor: 11.598

5.  PNPase activity determines the efficiency of mRNA 3'-end processing, the degradation of tRNA and the extent of polyadenylation in chloroplasts.

Authors:  Michael Walter; Joachim Kilian; Jörg Kudla
Journal:  EMBO J       Date:  2002-12-16       Impact factor: 11.598

6.  Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation.

Authors:  Douglas W Selinger; Rini Mukherjee Saxena; Kevin J Cheung; George M Church; Carsten Rosenow
Journal:  Genome Res       Date:  2003-02       Impact factor: 9.043

7.  Domain analysis of the chloroplast polynucleotide phosphorylase reveals discrete functions in RNA degradation, polyadenylation, and sequence homology with exosome proteins.

Authors:  Shlomit Yehudai-Resheff; Victoria Portnoy; Sivan Yogev; Noam Adir; Gadi Schuster
Journal:  Plant Cell       Date:  2003-09       Impact factor: 11.277

8.  Light control of hliA transcription and transcript stability in the cyanobacterium Synechococcus elongatus strain PCC 7942.

Authors:  Kavitha Salem; Lorraine G van Waasbergen
Journal:  J Bacteriol       Date:  2004-03       Impact factor: 3.490

9.  Identification of a novel human nuclear-encoded mitochondrial poly(A) polymerase.

Authors:  Rafal Tomecki; Aleksandra Dmochowska; Kamil Gewartowski; Andrzej Dziembowski; Piotr P Stepien
Journal:  Nucleic Acids Res       Date:  2004-11-16       Impact factor: 16.971

10.  The structure and enzymatic properties of a novel RNase II family enzyme from Deinococcus radiodurans.

Authors:  Brad J Schmier; Jayaraman Seetharaman; Murray P Deutscher; John F Hunt; Arun Malhotra
Journal:  J Mol Biol       Date:  2011-11-23       Impact factor: 5.469

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