Literature DB >> 12610526

The modern molecular clock.

Lindell Bromham1, David Penny.   

Abstract

The discovery of the molecular clock--a relatively constant rate of molecular evolution--provided an insight into the mechanisms of molecular evolution, and created one of the most useful new tools in biology. The unexpected constancy of rate was explained by assuming that most changes to genes are effectively neutral. Theory predicts several sources of variation in the rate of molecular evolution. However, even an approximate clock allows time estimates of events in evolutionary history, which provides a method for testing a wide range of biological hypotheses ranging from the origins of the animal kingdom to the emergence of new viral epidemics.

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Year:  2003        PMID: 12610526     DOI: 10.1038/nrg1020

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  157 in total

1.  Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution.

Authors:  Dmitri M Krylov; Yuri I Wolf; Igor B Rogozin; Eugene V Koonin
Journal:  Genome Res       Date:  2003-10       Impact factor: 9.043

2.  Prevalence of intron gain over intron loss in the evolution of paralogous gene families.

Authors:  Vladimir N Babenko; Igor B Rogozin; Sergei L Mekhedov; Eugene V Koonin
Journal:  Nucleic Acids Res       Date:  2004-07-14       Impact factor: 16.971

3.  Genome-wide molecular clock and horizontal gene transfer in bacterial evolution.

Authors:  Pavel S Novichkov; Marina V Omelchenko; Mikhail S Gelfand; Andrei A Mironov; Yuri I Wolf; Eugene V Koonin
Journal:  J Bacteriol       Date:  2004-10       Impact factor: 3.490

4.  The nearly neutral and selection theories of molecular evolution under the fisher geometrical framework: substitution rate, population size, and complexity.

Authors:  Pablo Razeto-Barry; Javier Díaz; Rodrigo A Vásquez
Journal:  Genetics       Date:  2012-03-16       Impact factor: 4.562

Review 5.  Variation in the mutation rate across mammalian genomes.

Authors:  Alan Hodgkinson; Adam Eyre-Walker
Journal:  Nat Rev Genet       Date:  2011-10-04       Impact factor: 53.242

6.  Relaxed molecular clocks, the bias-variance trade-off, and the quality of phylogenetic inference.

Authors:  Joel O Wertheim; Michael J Sanderson; Michael Worobey; Adam Bjork
Journal:  Syst Biol       Date:  2009-10-13       Impact factor: 15.683

7.  Changes in selective effects over time facilitate turnover of enhancer sequences.

Authors:  Kevin Bullaughey
Journal:  Genetics       Date:  2010-11-23       Impact factor: 4.562

Review 8.  Mutation and epigenetic molecular clocks in cancer.

Authors:  Darryl Shibata
Journal:  Carcinogenesis       Date:  2010-11-12       Impact factor: 4.944

Review 9.  Stem cell chronicles: autobiographies within genomes.

Authors:  Darryl Shibata; Simon Tavaré
Journal:  Stem Cell Rev       Date:  2007-01       Impact factor: 5.739

10.  Evolution and molecular phylogeny of Listeria monocytogenes isolated from human and animal listeriosis cases and foods.

Authors:  K K Nightingale; K Windham; M Wiedmann
Journal:  J Bacteriol       Date:  2005-08       Impact factor: 3.490

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