Literature DB >> 12586394

Common domains in the initiators of DNA replication in Bacteria, Archaea and Eukarya: combined structural, functional and phylogenetic perspectives.

Rafael Giraldo1.   

Abstract

Although DNA replication is the universal process for the transmission of genetic information in all living organisms, until very recently evidence was lacking for a related structure and function in the proteins (initiators) that trigger replication in the three 'Life Domains' (Bacteria, Archaea and Eukarya). In this article new data concerning the presence of common features in the initiators of chromosomal replication in bacteria, archaea and eukaryotes are reviewed. Initiators are discussed in the light of: (i) The structure and function of their conserved ATPases Associated with various cellular Activities (AAA+) and winged-helix domains. (ii) The nature of the macromolecular assemblies that they constitute at the replication origins. (iii) Their possible phylogenetic relationship, attempting to sketch the essentials of a hypothetical DNA replication initiator in the micro-organism proposed to be the ancestor of all living cells.

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Year:  2003        PMID: 12586394     DOI: 10.1111/j.1574-6976.2003.tb00629.x

Source DB:  PubMed          Journal:  FEMS Microbiol Rev        ISSN: 0168-6445            Impact factor:   16.408


  40 in total

1.  Biochemical characterization of Cdc6/Orc1 binding to the replication origin of the euryarchaeon Methanothermobacter thermoautotrophicus.

Authors:  Stephanie A Capaldi; James M Berger
Journal:  Nucleic Acids Res       Date:  2004-09-09       Impact factor: 16.971

2.  Origin remodeling and opening in bacteria rely on distinct assembly states of the DnaA initiator.

Authors:  Karl E Duderstadt; Melissa L Mott; Nancy J Crisona; Kevin Chuang; Haw Yang; James M Berger
Journal:  J Biol Chem       Date:  2010-07-01       Impact factor: 5.157

3.  DNA helicase activity is associated with the replication initiator protein rep of tomato yellow leaf curl geminivirus.

Authors:  Danielle Clérot; Françoise Bernardi
Journal:  J Virol       Date:  2006-08-30       Impact factor: 5.103

4.  ATPase-dependent cooperative binding of ORC and Cdc6 to origin DNA.

Authors:  Christian Speck; Zhiqiang Chen; Huilin Li; Bruce Stillman
Journal:  Nat Struct Mol Biol       Date:  2005-11       Impact factor: 15.369

Review 5.  Identification of replication origins in archaeal genomes based on the Z-curve method.

Authors:  Ren Zhang; Chun-Ting Zhang
Journal:  Archaea       Date:  2005-05       Impact factor: 3.273

6.  DNA binding by the Methanothermobacter thermautotrophicus Cdc6 protein is inhibited by the minichromosome maintenance helicase.

Authors:  Rajesh Kasiviswanathan; Jae-Ho Shin; Zvi Kelman
Journal:  J Bacteriol       Date:  2006-06       Impact factor: 3.490

7.  Structural basis for regulation of bifunctional roles in replication initiator protein.

Authors:  Akira Nakamura; Chieko Wada; Kunio Miki
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-13       Impact factor: 11.205

Review 8.  Conjugative plasmids: vessels of the communal gene pool.

Authors:  Anders Norman; Lars H Hansen; Søren J Sørensen
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2009-08-12       Impact factor: 6.237

9.  The Methanothermobacter thermautotrophicus Cdc6-2 protein, the putative helicase loader, dissociates the minichromosome maintenance helicase.

Authors:  Jae-Ho Shin; Gun Young Heo; Zvi Kelman
Journal:  J Bacteriol       Date:  2008-04-04       Impact factor: 3.490

10.  Two discriminatory binding sites in the Escherichia coli replication origin are required for DNA strand opening by initiator DnaA-ATP.

Authors:  Kevin C McGarry; Valorie T Ryan; Julia E Grimwade; Alan C Leonard
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-20       Impact factor: 11.205

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