Literature DB >> 12582609

Efficient development of dinucleotide microsatellite markers in Norway spruce ( Picea abies Karst.) through dot-blot selection.

I. Scotti1, P. Paglia, F. Magni, M. Morgante.   

Abstract

The development of microsatellite markers can be a time-consuming process, especially in species such as conifers where many microsatellites have been shown to be associated with the repetitive fraction of the genome and to produce complex banding patterns following electrophoresis. Therefore, procedures to eliminate this fraction from further processing are sought. In this paper, we report on the development of 53 dinucleotide SSR markers in Norway spruce, 35 of which (66%) produce simple, polymorphic patterns. This high efficiency is obtained by introducing a dot-blot selection against high copy number sequences, performed on the microsatellite-containing clones. The resulting markers turned out to be polymorphic and useful for population genetic studies and for linkage mapping. Seven additional markers that were not subject to the dot-blot selection are also presented.

Entities:  

Year:  2002        PMID: 12582609     DOI: 10.1007/s00122-001-0843-7

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN: 0040-5752            Impact factor:   5.699


  8 in total

1.  Robust simple sequence repeat markers for spruce (Picea spp.) from expressed sequence tags.

Authors:  Dainis Rungis; Yanik Bérubé; Jun Zhang; Steven Ralph; Carol E Ritland; Brian E Ellis; Carl Douglas; Jörg Bohlmann; Kermit Ritland
Journal:  Theor Appl Genet       Date:  2004-10       Impact factor: 5.699

2.  A composite linkage map from two crosses for the species complex Picea mariana x Picea rubens and analysis of synteny with other Pinaceae.

Authors:  Betty Pelgas; Jean Bousquet; Stéphanie Beauseigle; Nathalie Isabel
Journal:  Theor Appl Genet       Date:  2005-11-10       Impact factor: 5.699

3.  Comparative genome mapping among Picea glauca, P. mariana x P. rubens and P. abies, and correspondence with other Pinaceae.

Authors:  Betty Pelgas; Stéphanie Beauseigle; Virginie Acheré; Sylvain Jeandroz; Jean Bousquet; Nathalie Isabel
Journal:  Theor Appl Genet       Date:  2006-10-24       Impact factor: 5.699

4.  Clinal variation at phenology-related genes in spruce: parallel evolution in FTL2 and Gigantea?

Authors:  Jun Chen; Yoshiaki Tsuda; Michael Stocks; Thomas Källman; Nannan Xu; Katri Kärkkäinen; Tea Huotari; Vladimir L Semerikov; Giovanni G Vendramin; Martin Lascoux
Journal:  Genetics       Date:  2014-05-09       Impact factor: 4.562

5.  Cross-species transferability and mapping of genomic and cDNA SSRs in pines.

Authors:  D Chagné; P Chaumeil; A Ramboer; C Collada; A Guevara; M T Cervera; G G Vendramin; V Garcia; J-M Frigerio; C Echt; T Richardson; C Plomion
Journal:  Theor Appl Genet       Date:  2004-09-22       Impact factor: 5.699

6.  A full saturated linkage map of Picea abies including AFLP, SSR, ESTP, 5S rDNA and morphological markers.

Authors:  V Acheré; P Faivre-Rampant; S Jeandroz; G Besnard; T Markussen; A Aragones; M Fladung; E Ritter; J-M Favre
Journal:  Theor Appl Genet       Date:  2004-02-27       Impact factor: 5.699

7.  Highly variable SSR markers in Douglas-fir: Mendelian inheritance and map locations.

Authors:  G T Slavov; G T Howe; I Yakovlev; K J Edwards; K V Krutovskii; G A Tuskan; J E Carlson; S H Strauss; W T Adams
Journal:  Theor Appl Genet       Date:  2003-11-19       Impact factor: 5.699

8.  Highly informative single-copy nuclear microsatellite DNA markers developed using an AFLP-SSR approach in black spruce (Picea mariana) and red spruce (P. rubens).

Authors:  Yong-Zhong Shi; Natascha Forneris; Om P Rajora
Journal:  PLoS One       Date:  2014-08-15       Impact factor: 3.240

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.