Literature DB >> 14991106

A full saturated linkage map of Picea abies including AFLP, SSR, ESTP, 5S rDNA and morphological markers.

V Acheré1, P Faivre-Rampant, S Jeandroz, G Besnard, T Markussen, A Aragones, M Fladung, E Ritter, J-M Favre.   

Abstract

Based on an F(1) progeny of 73 individuals, two parental maps were constructed according to the double pseudo-test cross strategy. The paternal map contained 16 linkage groups for a total genetic length of 1,792 cM. The maternal map covered 1,920 cM, and consisted of 12 linkage groups. These parental maps were then integrated using 66 intercross markers. The resulting consensus map covered 2,035 cM and included 755 markers (661 AFLPs, 74 SSRs, 18 ESTPs, the 5S rDNA and the early cone formation trait) on 12 linkage groups, reflecting the haploid number of chromosomes of Picea abies. The average spacing between two adjacent markers was 2.6 cM. The presence of 39 of the SSR and/or ESTP markers from this consensus map on other published maps of different Picea and Pinus species allowed us to establish partial linkage group homologies across three P. abies maps (up to five common markers per linkage group). This first saturated linkage map of P. abies could be therefore used as a support for developing comparative genome mapping in conifers.

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Year:  2004        PMID: 14991106     DOI: 10.1007/s00122-004-1587-y

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN: 0040-5752            Impact factor:   5.699


  30 in total

1.  Inheritance of chloroplast and mitochondrial genomes in pedunculate oak investigated with an efficient PCR method.

Authors:  S Dumolin; B Demesure; R J Petit
Journal:  Theor Appl Genet       Date:  1995-12       Impact factor: 5.699

2.  AFLP: a new technique for DNA fingerprinting.

Authors:  P Vos; R Hogers; M Bleeker; M Reijans; T van de Lee; M Hornes; A Frijters; J Pot; J Peleman; M Kuiper
Journal:  Nucleic Acids Res       Date:  1995-11-11       Impact factor: 16.971

3.  Nearly complete genetic maps of Pinus sylvestris L. (Scots pine) constructed by AFLP marker analysis in a full-sib family.

Authors:  T-M Yin; X-R Wang; B Andersson; E Lerceteau-Köhler
Journal:  Theor Appl Genet       Date:  2003-02-21       Impact factor: 5.699

4.  Dense genetic linkage maps of three Populus species (Populus deltoides, P. nigra and P. trichocarpa) based on AFLP and microsatellite markers.

Authors:  M T Cervera; V Storme; B Ivens; J Gusmão; B H Liu; V Hostyn; J Van Slycken; M Van Montagu; W Boerjan
Journal:  Genetics       Date:  2001-06       Impact factor: 4.562

5.  Isolation, characterization, inheritance and linkage of microsatellite DNA markers in white spruce (Picea glauca) and their usefulness in other spruce species.

Authors:  O P Rajora; M H Rahman; S Dayanandan; A Mosseler
Journal:  Mol Gen Genet       Date:  2001-02

6.  Trinucleotide microsatellites in Norway spruce ( Picea abies): their features and the development of molecular markers.

Authors:  I Scotti; F Magni; G P Paglia; M Morgante
Journal:  Theor Appl Genet       Date:  2002-07-04       Impact factor: 5.699

7.  Construction of an AFLP genetic map with nearly complete genome coverage in Pinus taeda.

Authors:  D L Remington; R W Whetten; B H Liu; D M O'Malley
Journal:  Theor Appl Genet       Date:  1999-06       Impact factor: 5.699

8.  A consensus map for loblolly pine (Pinus taeda L.). I. Construction and integration of individual linkage maps from two outbred three-generation pedigrees.

Authors:  M M Sewell; B K Sherman; D B Neale
Journal:  Genetics       Date:  1999-01       Impact factor: 4.562

9.  Comparing EST-based genetic maps between Pinus sylvestris and Pinus taeda.

Authors:  P Komulainen; G R Brown; M Mikkonen; A Karhu; M R García-Gil; D O'Malley; B Lee; D B Neale; O Savolainen
Journal:  Theor Appl Genet       Date:  2003-06-25       Impact factor: 5.699

10.  A genetic linkage map of Picea abies Karst., based on RAPD markers, as a tool in population genetics.

Authors:  G Binelli; G Bucci
Journal:  Theor Appl Genet       Date:  1994-06       Impact factor: 5.699

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  11 in total

1.  A composite linkage map from two crosses for the species complex Picea mariana x Picea rubens and analysis of synteny with other Pinaceae.

Authors:  Betty Pelgas; Jean Bousquet; Stéphanie Beauseigle; Nathalie Isabel
Journal:  Theor Appl Genet       Date:  2005-11-10       Impact factor: 5.699

Review 2.  Towards decoding the conifer giga-genome.

Authors:  John Mackay; Jeffrey F D Dean; Christophe Plomion; Daniel G Peterson; Francisco M Cánovas; Nathalie Pavy; Pär K Ingvarsson; Outi Savolainen; M Ángeles Guevara; Silvia Fluch; Barbara Vinceti; Dolores Abarca; Carmen Díaz-Sala; María-Teresa Cervera
Journal:  Plant Mol Biol       Date:  2012-09-09       Impact factor: 4.076

3.  Comparative genome mapping among Picea glauca, P. mariana x P. rubens and P. abies, and correspondence with other Pinaceae.

Authors:  Betty Pelgas; Stéphanie Beauseigle; Virginie Acheré; Sylvain Jeandroz; Jean Bousquet; Nathalie Isabel
Journal:  Theor Appl Genet       Date:  2006-10-24       Impact factor: 5.699

4.  Early cone setting in Picea abies acrocona is associated with increased transcriptional activity of a MADS box transcription factor.

Authors:  Daniel Uddenberg; Johan Reimegård; David Clapham; Curt Almqvist; Sara von Arnold; Olof Emanuelsson; Jens F Sundström
Journal:  Plant Physiol       Date:  2012-12-07       Impact factor: 8.340

5.  Near-saturated and complete genetic linkage map of black spruce (Picea mariana).

Authors:  Bum-Yong Kang; Ishminder K Mann; John E Major; Om P Rajora
Journal:  BMC Genomics       Date:  2010-09-24       Impact factor: 3.969

6.  A microsatellite-based consensus linkage map for species of Eucalyptus and a novel set of 230 microsatellite markers for the genus.

Authors:  Rosana P V Brondani; Emlyn R Williams; Claudio Brondani; Dario Grattapaglia
Journal:  BMC Plant Biol       Date:  2006-09-22       Impact factor: 4.215

7.  Enhancing genetic mapping of complex genomes through the design of highly-multiplexed SNP arrays: application to the large and unsequenced genomes of white spruce and black spruce.

Authors:  Nathalie Pavy; Betty Pelgas; Stéphanie Beauseigle; Sylvie Blais; France Gagnon; Isabelle Gosselin; Manuel Lamothe; Nathalie Isabel; Jean Bousquet
Journal:  BMC Genomics       Date:  2008-01-18       Impact factor: 3.969

Review 8.  Sequenced genomes and rapidly emerging technologies pave the way for conifer evolutionary developmental biology.

Authors:  Daniel Uddenberg; Shirin Akhter; Prashanth Ramachandran; Jens F Sundström; Annelie Carlsbecker
Journal:  Front Plant Sci       Date:  2015-11-03       Impact factor: 5.753

9.  A Picea abies linkage map based on SNP markers identifies QTLs for four aspects of resistance to Heterobasidion parviporum infection.

Authors:  Mårten Lind; Thomas Källman; Jun Chen; Xiao-Fei Ma; Jean Bousquet; Michele Morgante; Giusi Zaina; Bo Karlsson; Malin Elfstrand; Martin Lascoux; Jan Stenlid
Journal:  PLoS One       Date:  2014-07-18       Impact factor: 3.240

10.  Genetic linkage map construction and QTL mapping of seedling height, basal diameter and crown width of Taxodium 'Zhongshanshan 302' × T. mucronatum.

Authors:  Ziyang Wang; Yanli Cheng; Yunlong Yin; Chaoguang Yu; Ying Yang; Qin Shi; Ziyuan Hao; Huogen Li
Journal:  Springerplus       Date:  2016-06-30
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