Literature DB >> 12582249

Characterization of the human beta-globin downstream promoter region.

Kelly M Leach1, Karen F Vieira, Sung-Hae Lee Kang, Ara Aslanian, Martin Teichmann, Robert G Roeder, Jörg Bungert.   

Abstract

The human beta-globin gene is abundantly expressed specifically in adult erythroid cells. Stage-specific transcription is regulated principally by promoter proximal cis-regulatory elements. The basal promoter contains a non-canonical TATA-like motif as well as an initiator element. These two elements have been shown to interact with the TFII-D complex. Here we show that in addition to the TATA and initiator elements, conserved E-box motifs are located in the beta-globin downstream promoter. One of the E-box motifs overlaps the initiator and this composite element interacts with USF1 and TFII-I in vitro. Another E-box, located 60 bp 3' to the transcription initiation site, interacts with USF1 and USF2. Mutations of either the initiator or the downstream E-box impair transcription of the beta-globin gene in vitro. Mutations of a putative NF-E2-binding site in the downstream promoter region do not affect transcription in vitro. USF1, USF2, TFII-I and p45 can be crosslinked to a beta-globin promoter fragment in MEL cells in vivo, whereas only TFII-I and USF2 crosslink to the beta-globin gene in K562 cells. The summary data demonstrate that in addition to the well-characterized interactions of the TFII-D complex with the basal promoter, E-box motifs contribute to the efficient formation of transcription complexes on the adult beta-globin gene.

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Year:  2003        PMID: 12582249      PMCID: PMC150227          DOI: 10.1093/nar/gkg209

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  46 in total

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Authors:  E C Forsberg; K M Downs; H M Christensen; H Im; P A Nuzzi; E H Bresnick
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

Review 2.  The human beta-globin locus control region.

Authors:  Padraic P Levings; Jörg Bungert
Journal:  Eur J Biochem       Date:  2002-03

3.  Combining chromatin immunoprecipitation and DNA footprinting: a novel method to analyze protein-DNA interactions in vivo.

Authors:  Sung-Hae Lee Kang; Karen Vieira; Jörg Bungert
Journal:  Nucleic Acids Res       Date:  2002-05-15       Impact factor: 16.971

4.  Stimulation of NF-E2 DNA binding by CREB-binding protein (CBP)-mediated acetylation.

Authors:  H L Hung; A Y Kim; W Hong; C Rakowski; G A Blobel
Journal:  J Biol Chem       Date:  2001-01-11       Impact factor: 5.157

5.  The stability of the TFIIA-TBP-DNA complex is dependent on the sequence of the TATAAA element.

Authors:  J J Stewart; L A Stargell
Journal:  J Biol Chem       Date:  2001-06-11       Impact factor: 5.157

6.  Hb Antalya [codons 3-5 (Leu-Thr-Pro-->Ser-Asp-Ser)]: a new unstable variant leading to chronic microcytic anemia and high Hb A2.

Authors:  I Keser; O G Kayisli; A Yesilipek; O N Ozes; G Luleci
Journal:  Hemoglobin       Date:  2001-11       Impact factor: 0.849

7.  Distinct mechanisms control RNA polymerase II recruitment to a tissue-specific locus control region and a downstream promoter.

Authors:  K D Johnson; H M Christensen; B Zhao; E H Bresnick
Journal:  Mol Cell       Date:  2001-08       Impact factor: 17.970

8.  Activation of beta-major globin gene transcription is associated with recruitment of NF-E2 to the beta-globin LCR and gene promoter.

Authors:  T Sawado; K Igarashi; M Groudine
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

9.  Physical and functional interactions of histone deacetylase 3 with TFII-I family proteins and PIASxbeta.

Authors:  María Isabel Tussié-Luna; Dashzeveg Bayarsaihan; Edward Seto; Frank H Ruddle; Ananda L Roy
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-18       Impact factor: 11.205

10.  Upstream stimulatory factors regulate aortic preferentially expressed gene-1 expression in vascular smooth muscle cells.

Authors:  Y H Chen; M D Layne; M Watanabe; S F Yet; M A Perrella
Journal:  J Biol Chem       Date:  2001-10-17       Impact factor: 5.157

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  21 in total

1.  Recruitment of transcription complexes to the beta-globin gene locus in vivo and in vitro.

Authors:  Karen F Vieira; Padraic P Levings; Meredith A Hill; Valerie J Crusselle; Sung-Hae Lee Kang; James Douglas Engel; Jörg Bungert
Journal:  J Biol Chem       Date:  2004-09-22       Impact factor: 5.157

2.  USF and NF-E2 cooperate to regulate the recruitment and activity of RNA polymerase II in the beta-globin gene locus.

Authors:  Zhuo Zhou; Xingguo Li; Changwang Deng; Paul A Ney; Suming Huang; Jörg Bungert
Journal:  J Biol Chem       Date:  2010-03-17       Impact factor: 5.157

3.  Synergistic and additive properties of the beta-globin locus control region (LCR) revealed by 5'HS3 deletion mutations: implication for LCR chromatin architecture.

Authors:  Xiangdong Fang; Jin Sun; Ping Xiang; Man Yu; Patrick A Navas; Kenneth R Peterson; George Stamatoyannopoulos; Qiliang Li
Journal:  Mol Cell Biol       Date:  2005-08       Impact factor: 4.272

4.  Lineage-specific activators affect beta-globin locus chromatin in multipotent hematopoietic progenitors.

Authors:  Stefania Bottardi; Julie Ross; Natacha Pierre-Charles; Volker Blank; Eric Milot
Journal:  EMBO J       Date:  2006-07-13       Impact factor: 11.598

5.  Antagonistic regulation of beta-globin gene expression by helix-loop-helix proteins USF and TFII-I.

Authors:  Valerie J Crusselle-Davis; Karen F Vieira; Zhuo Zhou; Archana Anantharaman; Jörg Bungert
Journal:  Mol Cell Biol       Date:  2006-09       Impact factor: 4.272

Review 6.  Role of helix-loop-helix proteins during differentiation of erythroid cells.

Authors:  Archana Anantharaman; I-Ju Lin; Joeva Barrow; Shermi Y Liang; Jude Masannat; John Strouboulis; Suming Huang; Jörg Bungert
Journal:  Mol Cell Biol       Date:  2011-01-31       Impact factor: 4.272

7.  Calpeptin increases the activity of upstream stimulatory factor and induces high level globin gene expression in erythroid cells.

Authors:  I-Ju Lin; Zhuo Zhou; Valerie J Crusselle-Davis; Babak Moghimi; Kunjal Gandhi; Archana Anantharaman; Dorjan Pantic; Suming Huang; Giridhararao Jayandharan; Li Zhong; Arun Srivastava; Jörg Bungert
Journal:  J Biol Chem       Date:  2009-06-02       Impact factor: 5.157

8.  Defective erythropoiesis in transgenic mice expressing dominant-negative upstream stimulatory factor.

Authors:  Shermi Y Liang; Babak Moghimi; Valerie J Crusselle-Davis; I-Ju Lin; Michael H Rosenberg; Xingguo Li; John Strouboulis; Suming Huang; Jörg Bungert
Journal:  Mol Cell Biol       Date:  2009-08-24       Impact factor: 4.272

9.  USF1 recruits histone modification complexes and is critical for maintenance of a chromatin barrier.

Authors:  Suming Huang; Xingguo Li; Timur M Yusufzai; Yi Qiu; Gary Felsenfeld
Journal:  Mol Cell Biol       Date:  2007-09-10       Impact factor: 4.272

10.  Upstream stimulatory factors, USF1 and USF2, bind to the human haem oxygenase-1 proximal promoter in vivo and regulate its transcription.

Authors:  Thomas D Hock; Harry S Nick; Anupam Agarwal
Journal:  Biochem J       Date:  2004-10-15       Impact factor: 3.857

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