Literature DB >> 12554857

After the ribosome structures: how are the subunits assembled?

James R Williamson1.   

Abstract

The recent structures of the ribosome and the ribosomal subunits only heighten the intrigue of trying to understand how the ribosome is assembled. Biochemical and mechanistic studies have mapped out the basic series of protein binding events that occur, but we do not yet have a clear picture of the RNA conformational changes that must accompany the protein binding. Recent studies point to roles of protein folding chaperones and RNA helicases as facilitators of ribosome assembly, but the basic process of assembly seems to be encoded in the RNA sequences and can occur for the most part spontaneously in vitro, and quite possibly in vivo as well.

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Year:  2003        PMID: 12554857      PMCID: PMC1370380          DOI: 10.1261/rna.2164903

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  20 in total

1.  Escherichia coli DbpA is an RNA helicase that requires hairpin 92 of 23S rRNA.

Authors:  C M Diges; O C Uhlenbeck
Journal:  EMBO J       Date:  2001-10-01       Impact factor: 11.598

2.  Incorporation of six additional proteins to complete the assembly map of the 50 S subunit from Escherichia coli ribosomes.

Authors:  M Herold; K H Nierhaus
Journal:  J Biol Chem       Date:  1987-06-25       Impact factor: 5.157

3.  Assembly mapping of 30 S ribosomal proteins from Escherichia coli. Further studies.

Authors:  W A Held; B Ballou; S Mizushima; M Nomura
Journal:  J Biol Chem       Date:  1974-05-25       Impact factor: 5.157

4.  In vitro synthesis of 16S ribosomal RNA containing single base changes and assembly into a functional 30S ribosome.

Authors:  W Krzyzosiak; R Denman; K Nurse; W Hellmann; M Boublik; C W Gehrke; P F Agris; J Ofengand
Journal:  Biochemistry       Date:  1987-04-21       Impact factor: 3.162

5.  Dynamics of in vitro assembly of 16 S rRNA into 30 S ribosomal subunits.

Authors:  T Powers; G Daubresse; H F Noller
Journal:  J Mol Biol       Date:  1993-07-20       Impact factor: 5.469

6.  Chemical evidence for domain assembly of the Escherichia coli 30S ribosome.

Authors:  C J Weitzmann; P R Cunningham; K Nurse; J Ofengand
Journal:  FASEB J       Date:  1993-01       Impact factor: 5.191

7.  Independent in vitro assembly of a ribonucleoprotein particle containing the 3' domain of 16S rRNA.

Authors:  R R Samaha; B O'Brien; T W O'Brien; H F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  1994-08-16       Impact factor: 11.205

8.  Ribosome structure determined by electron microscopy of Escherichia coli small subunits, large subunits and monomeric ribosomes.

Authors:  J A Lake
Journal:  J Mol Biol       Date:  1976-07-25       Impact factor: 5.469

9.  Osmolytes stimulate the reconstitution of functional 50S ribosomes from in vitro transcripts of Escherichia coli 23S rRNA.

Authors:  Katharina Semrad; Rachel Green
Journal:  RNA       Date:  2002-04       Impact factor: 4.942

10.  In vitro complementation analysis localizes 23S rRNA posttranscriptional modifications that are required for Escherichia coli 50S ribosomal subunit assembly and function.

Authors:  R Green; H F Noller
Journal:  RNA       Date:  1996-10       Impact factor: 4.942

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  29 in total

1.  Demonstration of the role of the DnaK chaperone system in assembly of 30S ribosomal subunits using a purified in vitro system.

Authors:  Jennifer A Maki; Daniel R Southworth; Gloria M Culver
Journal:  RNA       Date:  2003-12       Impact factor: 4.942

2.  DnaK-facilitated ribosome assembly in Escherichia coli revisited.

Authors:  Jean-Hervé Alix; Knud H Nierhaus
Journal:  RNA       Date:  2003-07       Impact factor: 4.942

3.  Structural insights into methyltransferase KsgA function in 30S ribosomal subunit biogenesis.

Authors:  Daniel Boehringer; Heather C O'Farrell; Jason P Rife; Nenad Ban
Journal:  J Biol Chem       Date:  2012-02-03       Impact factor: 5.157

4.  A telomerase holoenzyme protein enhances telomerase RNA assembly with telomerase reverse transcriptase.

Authors:  Ramadevi Prathapam; Keren L Witkin; Catherine M O'Connor; Kathleen Collins
Journal:  Nat Struct Mol Biol       Date:  2005-02-06       Impact factor: 15.369

5.  Nonbridging phosphate oxygens in 16S rRNA important for 30S subunit assembly and association with the 50S ribosomal subunit.

Authors:  Srikanta Ghosh; Simpson Joseph
Journal:  RNA       Date:  2005-04-05       Impact factor: 4.942

6.  Functional defects in transfer RNAs lead to the accumulation of ribosomal RNA precursors.

Authors:  Jacoba G Slagter-Jäger; Leopold Puzis; Nancy S Gutgsell; Marlene Belfort; Chaitanya Jain
Journal:  RNA       Date:  2007-02-09       Impact factor: 4.942

Review 7.  Ribosome biogenesis and the translation process in Escherichia coli.

Authors:  Magdalena Kaczanowska; Monica Rydén-Aulin
Journal:  Microbiol Mol Biol Rev       Date:  2007-09       Impact factor: 11.056

8.  Structural aspects of RbfA action during small ribosomal subunit assembly.

Authors:  Partha P Datta; Daniel N Wilson; Masahito Kawazoe; Neil K Swami; Tatsuya Kaminishi; Manjuli R Sharma; Timothy M Booth; Chie Takemoto; Paola Fucini; Shigeyuki Yokoyama; Rajendra K Agrawal
Journal:  Mol Cell       Date:  2007-11-09       Impact factor: 17.970

9.  The evolution and functional repertoire of translation proteins following the origin of life.

Authors:  Aaron D Goldman; Ram Samudrala; John A Baross
Journal:  Biol Direct       Date:  2010-04-08       Impact factor: 4.540

10.  A dominant negative mutant of the E. coli RNA helicase DbpA blocks assembly of the 50S ribosomal subunit.

Authors:  Lisa M Sharpe Elles; Michael T Sykes; James R Williamson; Olke C Uhlenbeck
Journal:  Nucleic Acids Res       Date:  2009-09-04       Impact factor: 16.971

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