Literature DB >> 11991636

Osmolytes stimulate the reconstitution of functional 50S ribosomes from in vitro transcripts of Escherichia coli 23S rRNA.

Katharina Semrad1, Rachel Green.   

Abstract

Functional Escherichia coli 50S ribosomal subunits can be reconstituted from their natural rRNA and protein components. However, when the assembly is performed with in vitro-transcribed 23S rRNA, the reconstitution efficiency is diminished by four orders of magnitude. We tested a variety of chemical chaperones (compounds that are typically used for protein folding), putative RNA chaperones (proteins) and ribosome-targeted antibiotics (small-molecule ligands) that might be reasoned to aid in folding and assembly. Addition of the osmolyte trimethylamine-oxide (TMAO) and the ketolide antibiotic telithromycin (HMR3647) to the reconstitution stimulates its efficiency up to 100-fold yielding a substantially improved system for the in vitro analysis of mutant ribosomes.

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Year:  2002        PMID: 11991636      PMCID: PMC1370264          DOI: 10.1017/s1355838202029722

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  42 in total

1.  Increased thermal stability of proteins in the presence of naturally occurring osmolytes.

Authors:  M M Santoro; Y Liu; S M Khan; L X Hou; D W Bolen
Journal:  Biochemistry       Date:  1992-06-16       Impact factor: 3.162

Review 2.  The assembly of prokaryotic ribosomes.

Authors:  K H Nierhaus
Journal:  Biochimie       Date:  1991-06       Impact factor: 4.079

3.  Cloning, in vitro transcription, and biological activity of Escherichia coli 23S ribosomal RNA.

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Journal:  Nucleic Acids Res       Date:  1990-06-25       Impact factor: 16.971

4.  Total reconstitution of active large ribosomal subunits of the thermoacidophilic archaebacterium Sulfolobus solfataricus.

Authors:  P Londei; J Teixidò; M Acca; P Cammarano; R Amils
Journal:  Nucleic Acids Res       Date:  1986-03-11       Impact factor: 16.971

5.  Antibiotic resistance mutations in the chloroplast 16S and 23S rRNA genes of Chlamydomonas reinhardtii: correlation of genetic and physical maps of the chloroplast genome.

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Journal:  Genetics       Date:  1989-10       Impact factor: 4.562

6.  Implications of a functional large ribosomal RNA with only three modified nucleotides.

Authors:  K Sirum-Connolly; J M Peltier; P F Crain; J A McCloskey; T L Mason
Journal:  Biochimie       Date:  1995       Impact factor: 4.079

7.  Affinities of tRNA binding sites of ribosomes from Escherichia coli.

Authors:  R Lill; J M Robertson; W Wintermeyer
Journal:  Biochemistry       Date:  1986-06-03       Impact factor: 3.162

8.  Why do some organisms use a urea-methylamine mixture as osmolyte? Thermodynamic compensation of urea and trimethylamine N-oxide interactions with protein.

Authors:  T Y Lin; S N Timasheff
Journal:  Biochemistry       Date:  1994-10-25       Impact factor: 3.162

9.  Polyethylene glycol enhanced protein refolding.

Authors:  J L Cleland; S E Builder; J R Swartz; M Winkler; J Y Chang; D I Wang
Journal:  Biotechnology (N Y)       Date:  1992-09

10.  Escherichia coli proteins, including ribosomal protein S12, facilitate in vitro splicing of phage T4 introns by acting as RNA chaperones.

Authors:  T Coetzee; D Herschlag; M Belfort
Journal:  Genes Dev       Date:  1994-07-01       Impact factor: 11.361

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  22 in total

Review 1.  After the ribosome structures: how are the subunits assembled?

Authors:  James R Williamson
Journal:  RNA       Date:  2003-02       Impact factor: 4.942

2.  DnaK-facilitated ribosome assembly in Escherichia coli revisited.

Authors:  Jean-Hervé Alix; Knud H Nierhaus
Journal:  RNA       Date:  2003-07       Impact factor: 4.942

3.  Interference probing of rRNA with snoRNPs: a novel approach for functional mapping of RNA in vivo.

Authors:  Ben Liu; Maurille J Fournier
Journal:  RNA       Date:  2004-07       Impact factor: 4.942

4.  Isolation of antibiotic resistance mutations in the rRNA by using an in vitro selection system.

Authors:  Luisa Cochella; Rachel Green
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-04       Impact factor: 11.205

Review 5.  Inhibition of bacterial ribosome assembly: a suitable drug target?

Authors:  Bruce A Maguire
Journal:  Microbiol Mol Biol Rev       Date:  2009-03       Impact factor: 11.056

6.  Mutational characterization and mapping of the 70S ribosome active site.

Authors:  Anne E d'Aquino; Tasfia Azim; Nikolay A Aleksashin; Adam J Hockenberry; Antje Krüger; Michael C Jewett
Journal:  Nucleic Acids Res       Date:  2020-03-18       Impact factor: 16.971

Review 7.  Repurposing ribosomes for synthetic biology.

Authors:  Yi Liu; Do Soon Kim; Michael C Jewett
Journal:  Curr Opin Chem Biol       Date:  2017-09-01       Impact factor: 8.822

8.  Exploration of the conserved A+C wobble pair within the ribosomal peptidyl transferase center using affinity purified mutant ribosomes.

Authors:  Ashley Eversole Hesslein; Vladimir I Katunin; Malte Beringer; Anne B Kosek; Marina V Rodnina; Scott A Strobel
Journal:  Nucleic Acids Res       Date:  2004-07-15       Impact factor: 16.971

9.  Removal of a ribosome small subunit-dependent GTPase confers salt resistance on Escherichia coli cells.

Authors:  Yoichi Hase; Shinichiro Yokoyama; Akira Muto; Hyouta Himeno
Journal:  RNA       Date:  2009-07-20       Impact factor: 4.942

10.  Effects of osmolytes on RNA secondary and tertiary structure stabilities and RNA-Mg2+ interactions.

Authors:  Dominic Lambert; David E Draper
Journal:  J Mol Biol       Date:  2007-05-05       Impact factor: 5.469

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