Literature DB >> 12547423

Overview of structural genomics: from structure to function.

Chao Zhang1, Sung-Hou Kim.   

Abstract

The unprecedented increase in the number of new protein sequences arising from genomics and proteomics highlights directly the need for methods to rapidly and reliably determine the molecular and cellular functions of these proteins. One such approach, structural genomics, aims to delineate the total repertoire of protein folds, thereby providing three-dimensional portraits for all proteins in a living organism and to infer molecular functions of the proteins. The goal of obtaining protein structures on a genomic scale has motivated the development of high-throughput technologies for macromolecular structure determination, which have begun to produce structures at a greater rate than previously possible. These new structures have revealed many unexpected functional and evolution relationships that were hidden at the sequence level.

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Year:  2003        PMID: 12547423     DOI: 10.1016/s1367-5931(02)00015-7

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  39 in total

1.  A global representation of the protein fold space.

Authors:  Jingtong Hou; Gregory E Sims; Chao Zhang; Sung-Hou Kim
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-26       Impact factor: 11.205

2.  3-Keto-5-aminohexanoate cleavage enzyme: a common fold for an uncommon Claisen-type condensation.

Authors:  Marco Bellinzoni; Karine Bastard; Alain Perret; Anne Zaparucha; Nadia Perchat; Carine Vergne; Tristan Wagner; Raquel C de Melo-Minardi; François Artiguenave; Georges N Cohen; Jean Weissenbach; Marcel Salanoubat; Pedro M Alzari
Journal:  J Biol Chem       Date:  2011-06-01       Impact factor: 5.157

3.  Tools for comparative protein structure modeling and analysis.

Authors:  Narayanan Eswar; Bino John; Nebojsa Mirkovic; Andras Fiser; Valentin A Ilyin; Ursula Pieper; Ashley C Stuart; Marc A Marti-Renom; M S Madhusudhan; Bozidar Yerkovich; Andrej Sali
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

Review 4.  Target selection and determination of function in structural genomics.

Authors:  James D Watson; Annabel E Todd; James Bray; Roman A Laskowski; Aled Edwards; Andrzej Joachimiak; Christine A Orengo; Janet M Thornton
Journal:  IUBMB Life       Date:  2003 Apr-May       Impact factor: 3.885

5.  Database searching by flexible protein structure alignment.

Authors:  Yuzhen Ye; Adam Godzik
Journal:  Protein Sci       Date:  2004-07       Impact factor: 6.725

6.  Structural genomics of eukaryotic targets at a laboratory scale.

Authors:  Didier Busso; Pierre Poussin-Courmontagne; David Rosé; Raymond Ripp; Alain Litt; Jean-Claude Thierry; Dino Moras
Journal:  J Struct Funct Genomics       Date:  2005

7.  Global mapping of the protein structure space and application in structure-based inference of protein function.

Authors:  Jingtong Hou; Se-Ran Jun; Chao Zhang; Sung-Hou Kim
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-10       Impact factor: 11.205

8.  High-throughput computational and experimental techniques in structural genomics.

Authors:  Mark R Chance; Andras Fiser; Andrej Sali; Ursula Pieper; Narayanan Eswar; Guiping Xu; J Eduardo Fajardo; Thirumuruhan Radhakannan; Nebojsa Marinkovic
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

9.  Structural similarity to bridge sequence space: finding new families on the bridges.

Authors:  Parantu K Shah; Patrick Aloy; Peer Bork; Robert B Russell
Journal:  Protein Sci       Date:  2005-05       Impact factor: 6.725

10.  A limited universe of membrane protein families and folds.

Authors:  Amit Oberai; Yungok Ihm; Sanguk Kim; James U Bowie
Journal:  Protein Sci       Date:  2006-07       Impact factor: 6.725

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