Literature DB >> 10891262

Use of a new label, (13)==(18)O, in the determination of a structural model of phospholamban in a lipid bilayer. Spatial restraints resolve the ambiguity arising from interpretations of mutagenesis data.

J Torres1, P D Adams, I T Arkin.   

Abstract

A structural model of pentameric phospholamban (Plb) in a lipid bilayer has been derived using a combination of experimental data, obtained from ATR-FTIR site-directed dichroism, and the implementation of the resulting restraints during a molecular dynamics simulation. Plb (residues 24-52) has been synthesised incorporating a new label, 1-(13)C==(18)O, at residues 42 and 43. We have not only determined the tilt of the helices, 10(+/-6) degrees, but also the relative orientation of the transmembrane segments, with an omega angle of -32(+/-10) degrees for L42. This angle is taken as zero in the direction of the helix tilt. Plb is a simple test case where site-directed dichroism has been applied to resolve the indeterminacy arising from the mutagenesis data available. The results presented point specifically to a single structural model for Plb. Copyright 2000 Academic Press.

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Year:  2000        PMID: 10891262     DOI: 10.1006/jmbi.2000.3885

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  39 in total

1.  C-deuterated alanine: a new label to study membrane protein structure using site-specific infrared dichroism.

Authors:  Jaume Torres; Isaiah T Arkin
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

2.  Mapping the energy surface of transmembrane helix-helix interactions.

Authors:  J Torres; A Kukol; I T Arkin
Journal:  Biophys J       Date:  2001-11       Impact factor: 4.033

3.  Contribution of energy values to the analysis of global searching molecular dynamics simulations of transmembrane helical bundles.

Authors:  Jaume Torres; John A G Briggs; Isaiah T Arkin
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

4.  Computational design of a water-soluble analog of phospholamban.

Authors:  Avram M Slovic; Christopher M Summa; James D Lear; William F DeGrado
Journal:  Protein Sci       Date:  2003-02       Impact factor: 6.725

Review 5.  How do helix-helix interactions help determine the folds of membrane proteins? Perspectives from the study of homo-oligomeric helical bundles.

Authors:  William F DeGrado; Holly Gratkowski; James D Lear
Journal:  Protein Sci       Date:  2003-04       Impact factor: 6.725

6.  Site-specific dichroism analysis utilizing transmission FTIR.

Authors:  Eyal Arbely; Itamar Kass; Isaiah T Arkin
Journal:  Biophys J       Date:  2003-10       Impact factor: 4.033

7.  Evaluation of the ordering of membranes in multilayer stacks built on an ATR-FTIR germanium crystal with atomic force microscopy: the case of the H(+),K(+)-ATPase-containing gastric tubulovesicle membranes.

Authors:  Dimitri Ivanov; Nicolas Dubreuil; Vincent Raussens; Jean-Marie Ruysschaert; Erik Goormaghtigh
Journal:  Biophys J       Date:  2004-08       Impact factor: 4.033

8.  Modeling sample disorder in site-specific dichroism studies of uniaxial systems.

Authors:  Itamar Kass; Eyal Arbely; Isaiah T Arkin
Journal:  Biophys J       Date:  2004-04       Impact factor: 4.033

9.  Design, synthesis, and photochemical validation of peptide linchpins containing the S,S-tetrazine phototrigger.

Authors:  Mohannad Abdo; Stephen P Brown; Joel R Courter; Matthew J Tucker; Robin M Hochstrasser; Amos B Smith
Journal:  Org Lett       Date:  2012-06-26       Impact factor: 6.005

10.  Structural constraints on the transmembrane and juxtamembrane regions of the phospholamban pentamer in membrane bilayers: Gln29 and Leu52.

Authors:  Wei Liu; Jeffrey Z Fei; Toru Kawakami; Steven O Smith
Journal:  Biochim Biophys Acta       Date:  2007-10-22
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