Literature DB >> 12520057

NTDB: Thermodynamic Database for Nucleic Acids, Version 2.0.

Wing Lok Abe Kurtz Chiu1, Chun Ngai Sze, Nap Tak Ma, Lai Fan Chiu, Chung Wai Leung, Steve Chik Fun Au-Yeung.   

Abstract

The second release of Thermodynamic Database for Nucleic Acids, NTDB 2.0, includes more than 4600 entries (250% increase over release 1.0). It contains sequence types and details of several thermodynamic parameters (enthalpy, DeltaH; entropy, DeltaS; Gibbs free energy, DeltaG; melting temperature, T(m)), experimental models and methods for extracting thermodynamic parameters, buffer conditions as well as all relevant literature information. In addition, the database statistics and references related to NTDB are included. Information on normal and modified nucleobases and nucleosides are collected in a new section 'Nucleoside' whereby data collected thus far will be release in NTDB 2.0. The NTDB is freely available at http://ntdb.chem.cuhk.edu.hk.

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Year:  2003        PMID: 12520057      PMCID: PMC165561          DOI: 10.1093/nar/gkg114

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  6 in total

1.  NTDB: Thermodynamic Database for Nucleic Acids.

Authors:  W L Chiu; C N Sze; L N Ip; S K Chan; S C Au-Yeung
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  The Protein Data Bank: unifying the archive.

Authors:  John Westbrook; Zukang Feng; Shri Jain; T N Bhat; Narmada Thanki; Veerasamy Ravichandran; Gary L Gilliland; Wolfgang Bluhm; Helge Weissig; Douglas S Greer; Philip E Bourne; Helen M Berman
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

3.  The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids.

Authors:  H M Berman; W K Olson; D L Beveridge; J Westbrook; A Gelbin; T Demeny; S H Hsieh; A R Srinivasan; B Schneider
Journal:  Biophys J       Date:  1992-09       Impact factor: 4.033

4.  The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

Authors:  A Bairoch; R Apweiler
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

5.  Database resources of the National Center for Biotechnology Information: 2002 update.

Authors:  David L Wheeler; Deanna M Church; Alex E Lash; Detlef D Leipe; Thomas L Madden; Joan U Pontius; Gregory D Schuler; Lynn M Schriml; Tatiana A Tatusova; Lukas Wagner; Barbara A Rapp
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

6.  The ups and downs of nucleic acid duplex stability: structure-stability studies on chemically-modified DNA:RNA duplexes.

Authors:  S M Freier; K H Altmann
Journal:  Nucleic Acids Res       Date:  1997-11-15       Impact factor: 16.971

  6 in total
  2 in total

1.  dnaMATE: a consensus melting temperature prediction server for short DNA sequences.

Authors:  Alejandro Panjkovich; Tomás Norambuena; Francisco Melo
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

2.  Energy parameters and novel algorithms for an extended nearest neighbor energy model of RNA.

Authors:  Ivan Dotu; Vinodh Mechery; Peter Clote
Journal:  PLoS One       Date:  2014-02-21       Impact factor: 3.240

  2 in total

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