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Literature DB >> 11125100

NTDB: Thermodynamic Database for Nucleic Acids.

W L Chiu¹, C N Sze, L N Ip, S K Chan, S C Au-Yeung.

Abstract

A new thermodynamic database for normal and modified nucleic acids has been developed. This Thermodynamic Database for Nucleic Acids (NTDB) includes sequence, structure and thermodynamic information as well as experimental methods and conditions. In this release, there are 1851 sequences containing both normal and modified nucleic acids. A user-friendly web-based interface has been developed to allow data searching under different conditions. Useful thermodynamic tools for the study of nucleic acids have been collected and linked for easy usage. NTDB is available at http://ntdb.chem.cuhk.edu.hk.

Mesh：

Substances：
Nucleic Acids

Year: 2001 PMID： 11125100 PMCID： PMC29845 DOI： 10.1093/nar/29.1.230

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

15 in total

1. ProTherm, version 2.0: thermodynamic database for proteins and mutants.

Authors: M M Gromiha; J An; H Kono; M Oobatake; H Uedaira; P Prabakaran; A Sarai
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

2. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure.

Authors: D H Mathews; J Sabina; M Zuker; D H Turner
Journal: J Mol Biol Date: 1999-05-21 Impact factor: 5.469

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Journal: Nature Date: 1993-08-05 Impact factor: 49.962

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Journal: J Biol Chem Date: 1989-08-25 Impact factor: 5.157

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Authors: M Zuker
Journal: Science Date: 1989-04-07 Impact factor: 47.728

6. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase.

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Journal: Science Date: 1988-01-29 Impact factor: 47.728

7. Comparison between DNA melting thermodynamics and DNA polymerase fidelity.

Authors: J Petruska; M F Goodman; M S Boosalis; L C Sowers; C Cheong; I Tinoco
Journal: Proc Natl Acad Sci U S A Date: 1988-09 Impact factor: 11.205

8. Rapid and efficient site-specific mutagenesis without phenotypic selection.

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Journal: Methods Enzymol Date: 1987 Impact factor: 1.600

9. Light-generated oligonucleotide arrays for rapid DNA sequence analysis.

Authors: A C Pease; D Solas; E J Sullivan; M T Cronin; C P Holmes; S P Fodor
Journal: Proc Natl Acad Sci U S A Date: 1994-05-24 Impact factor: 11.205

10. Simultaneous identification of strains of Escherichia coli serotype O157:H7 and their Shiga-like toxin type by mismatch amplification mutation assay-multiplex PCR.

Authors: T A Cebula; W L Payne; P Feng
Journal: J Clin Microbiol Date: 1995-01 Impact factor: 5.948

2 in total

1. NTDB: Thermodynamic Database for Nucleic Acids, Version 2.0.

Authors: Wing Lok Abe Kurtz Chiu; Chun Ngai Sze; Nap Tak Ma; Lai Fan Chiu; Chung Wai Leung; Steve Chik Fun Au-Yeung
Journal: Nucleic Acids Res Date: 2003-01-01 Impact factor: 16.971

2. Text mining neuroscience journal articles to populate neuroscience databases.

Authors: Chiquito J Crasto; Luis N Marenco; Michele Migliore; Buqing Mao; Prakash M Nadkarni; Perry Miller; Gordon M Shepherd
Journal: Neuroinformatics Date: 2003

2 in total