Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 Noncoding regulatory RNAs database.

Literature DB >> 12520042

Noncoding regulatory RNAs database.

Maciej Szymański¹, Volker A Erdmann, Jan Barciszewski.

Abstract

The noncoding RNAs database is a collection of currently available sequence data on RNAs, which have no protein-coding capacity and have been implicated in regulation of cellular processes. The RNAs included in the database form very heterogenous group of molecules that act on different levels of information transmission in the cell. It includes RNAs acting on the level of chromatin structure, transcriptional and translational regulation of gene expression, modulation of protein function and regulation of subcellular distribution of RNAs and proteins. Those RNAs, with potential regulatory functions have been identified in prokaryotic, animal and plant cells. The database can be accessed at http://biobases.ibch.poznan.pl/ncRNA/.

Entities: Gene

Mesh：

Substances：

Year: 2003 PMID： 12520042 PMCID： PMC165571 DOI： 10.1093/nar/gkg124

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

28 in total

1. The non-coding RNAs as riboregulators.

Authors: V A Erdmann; M Z Barciszewska; M Szymanski; A Hochberg; N de Groot; J Barciszewski
Journal: Nucleic Acids Res Date: 2001-01-01 Impact factor: 16.971

Review 2. X-chromosome inactivation: counting, choice and initiation.

Authors: P Avner; E Heard
Journal: Nat Rev Genet Date: 2001-01 Impact factor: 53.242

3. 6S RNA regulates E. coli RNA polymerase activity.

Authors: K M Wassarman; G Storz
Journal: Cell Date: 2000-06-09 Impact factor: 41.582

4. Identification of novel small RNAs using comparative genomics and microarrays.

Authors: K M Wassarman; F Repoila; C Rosenow; G Storz; S Gottesman
Journal: Genes Dev Date: 2001-07-01 Impact factor: 11.361

5. TTY2: a multicopy Y-linked gene family.

Authors: E Makrinou; M Fox; M Lovett; K Haworth; J M Cameron; K Taylor; Y H Edwards
Journal: Genome Res Date: 2001-06 Impact factor: 9.043

6. Novel small RNA-encoding genes in the intergenic regions of Escherichia coli.

Authors: L Argaman; R Hershberg; J Vogel; G Bejerano; E G Wagner; H Margalit; S Altuvia
Journal: Curr Biol Date: 2001-06-26 Impact factor: 10.834

7. Transcripts of the MHM region on the chicken Z chromosome accumulate as non-coding RNA in the nucleus of female cells adjacent to the DMRT1 locus.

Authors: M Teranishi; Y Shimada; T Hori; O Nakabayashi; T Kikuchi; T Macleod; R Pym; B Sheldon; I Solovei; H Macgregor; S Mizuno
Journal: Chromosome Res Date: 2001 Impact factor: 5.239

8. Targeted disruption of the human LIT1 locus defines a putative imprinting control element playing an essential role in Beckwith-Wiedemann syndrome.

Authors: S Horike; K Mitsuya; M Meguro; N Kotobuki; A Kashiwagi; T Notsu; T C Schulz; Y Shirayoshi; M Oshimura
Journal: Hum Mol Genet Date: 2000-09-01 Impact factor: 6.150

9. Identification of an endogenous RNA transcribed from the antisense strand of the HFE gene.

Authors: A C Thénié; I M Gicquel; S Hardy; H Ferran; P Fergelot; J Y Le Gall; J Mosser
Journal: Hum Mol Genet Date: 2001-08-15 Impact factor: 6.150

10. Loss of imprinting of long QT intronic transcript 1 in colorectal cancer.

Authors: K Tanaka; G Shiota; M Meguro; K Mitsuya; M Oshimura; H Kawasaki
Journal: Oncology Date: 2001 Impact factor: 2.935

19 in total

1. Non-coding RNAs revealed during identification of genes involved in chicken immune responses.

Authors: Marie-Laure Endale Ahanda; Thomas Ruby; Håkan Wittzell; Bertrand Bed'Hom; Anne-Marie Chaussé; Veronique Morin; Anne Oudin; Catherine Chevalier; John R Young; Rima Zoorob
Journal: Immunogenetics Date: 2008-11-14 Impact factor: 2.846

Review 2. From discovery to function: the expanding roles of long noncoding RNAs in physiology and disease.

Authors: Miao Sun; W Lee Kraus
Journal: Endocr Rev Date: 2014-11-26 Impact factor: 19.871

3. From raw materials to validated system: the construction of a genomic library and microarray to interpret systemic perturbations in Northern bobwhite.

Authors: Arun Rawat; Kurt A Gust; Youping Deng; Natàlia Garcia-Reyero; Michael J Quinn; Mark S Johnson; Karl J Indest; Mohamed O Elasri; Edward J Perkins
Journal: Physiol Genomics Date: 2010-04-20 Impact factor: 3.107

Noncoding regulatory RNAs database.

1. The non-coding RNAs as riboregulators.

Review 2. X-chromosome inactivation: counting, choice and initiation.

3. 6S RNA regulates E. coli RNA polymerase activity.

4. Identification of novel small RNAs using comparative genomics and microarrays.

5. TTY2: a multicopy Y-linked gene family.

6. Novel small RNA-encoding genes in the intergenic regions of Escherichia coli.

7. Transcripts of the MHM region on the chicken Z chromosome accumulate as non-coding RNA in the nucleus of female cells adjacent to the DMRT1 locus.

8. Targeted disruption of the human LIT1 locus defines a putative imprinting control element playing an essential role in Beckwith-Wiedemann syndrome.

9. Identification of an endogenous RNA transcribed from the antisense strand of the HFE gene.

10. Loss of imprinting of long QT intronic transcript 1 in colorectal cancer.

1. Non-coding RNAs revealed during identification of genes involved in chicken immune responses.

Review 2. From discovery to function: the expanding roles of long noncoding RNAs in physiology and disease.

3. From raw materials to validated system: the construction of a genomic library and microarray to interpret systemic perturbations in Northern bobwhite.

4. Regulation of the vitamin B12 metabolism and transport in bacteria by a conserved RNA structural element.

5. RNAProfile: an algorithm for finding conserved secondary structure motifs in unaligned RNA sequences.

Review 6. Bioinformatics tools and novel challenges in long non-coding RNAs (lncRNAs) functional analysis.

7. NPInter: the noncoding RNAs and protein related biomacromolecules interaction database.

8. A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription.

9. Detection of intergenic non-coding RNAs expressed in the main developmental stages in Drosophila melanogaster.

10. Transcripts of unknown function in multiple-signaling pathways involved in human stem cell differentiation.