Literature DB >> 19009289

Non-coding RNAs revealed during identification of genes involved in chicken immune responses.

Marie-Laure Endale Ahanda1, Thomas Ruby, Håkan Wittzell, Bertrand Bed'Hom, Anne-Marie Chaussé, Veronique Morin, Anne Oudin, Catherine Chevalier, John R Young, Rima Zoorob.   

Abstract

Recent large-scale cDNA cloning studies have shown that a significant proportion of the transcripts expressed from vertebrate genomes do not appear to encode protein. Moreover, it was reported in mammals (human and mice) that these non-coding transcripts are expressed and regulated by mechanisms similar to those involved in the control of protein-coding genes. We have produced a collection of cDNA sequences from immunologically active tissues with the aim of discovering chicken genes involved in immune mechanisms, and we decided to explore the non-coding component of these immune-related libraries. After finding known non-coding RNAs (miRNA, snRNA, snoRNA), we identified new putative mRNA-like non-coding RNAs. We characterised their expression profiles in immune-related samples. Some of them showed changes in expression following viral infections. As they exhibit patterns of expression that parallel the behaviour of protein-coding RNAs in immune tissues, our study suggests that they could play an active role in the immune response.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 19009289     DOI: 10.1007/s00251-008-0337-8

Source DB:  PubMed          Journal:  Immunogenetics        ISSN: 0093-7711            Impact factor:   2.846


  71 in total

1.  Validating clustering for gene expression data.

Authors:  K Y Yeung; D R Haynor; W L Ruzzo
Journal:  Bioinformatics       Date:  2001-04       Impact factor: 6.937

2.  Transcriptional profiling reveals a possible role for the timing of the inflammatory response in determining susceptibility to a viral infection.

Authors:  Thomas Ruby; Catherine Whittaker; David R Withers; Mounira K Chelbi-Alix; Veronique Morin; Anne Oudin; John R Young; Rima Zoorob
Journal:  J Virol       Date:  2006-09       Impact factor: 5.103

Review 3.  Non-coding-RNA regulators of RNA polymerase II transcription.

Authors:  James A Goodrich; Jennifer F Kugel
Journal:  Nat Rev Mol Cell Biol       Date:  2006-05-24       Impact factor: 94.444

4.  NF-kappaB-dependent induction of microRNA miR-146, an inhibitor targeted to signaling proteins of innate immune responses.

Authors:  Konstantin D Taganov; Mark P Boldin; Kuang-Jung Chang; David Baltimore
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-02       Impact factor: 11.205

Review 5.  MicroRNAs as regulators of mammalian hematopoiesis.

Authors:  Chang-Zheng Chen; Harvey F Lodish
Journal:  Semin Immunol       Date:  2005-04       Impact factor: 11.130

6.  The transcriptional landscape of the mammalian genome.

Authors:  P Carninci; T Kasukawa; S Katayama; J Gough; M C Frith; N Maeda; R Oyama; T Ravasi; B Lenhard; C Wells; R Kodzius; K Shimokawa; V B Bajic; S E Brenner; S Batalov; A R R Forrest; M Zavolan; M J Davis; L G Wilming; V Aidinis; J E Allen; A Ambesi-Impiombato; R Apweiler; R N Aturaliya; T L Bailey; M Bansal; L Baxter; K W Beisel; T Bersano; H Bono; A M Chalk; K P Chiu; V Choudhary; A Christoffels; D R Clutterbuck; M L Crowe; E Dalla; B P Dalrymple; B de Bono; G Della Gatta; D di Bernardo; T Down; P Engstrom; M Fagiolini; G Faulkner; C F Fletcher; T Fukushima; M Furuno; S Futaki; M Gariboldi; P Georgii-Hemming; T R Gingeras; T Gojobori; R E Green; S Gustincich; M Harbers; Y Hayashi; T K Hensch; N Hirokawa; D Hill; L Huminiecki; M Iacono; K Ikeo; A Iwama; T Ishikawa; M Jakt; A Kanapin; M Katoh; Y Kawasawa; J Kelso; H Kitamura; H Kitano; G Kollias; S P T Krishnan; A Kruger; S K Kummerfeld; I V Kurochkin; L F Lareau; D Lazarevic; L Lipovich; J Liu; S Liuni; S McWilliam; M Madan Babu; M Madera; L Marchionni; H Matsuda; S Matsuzawa; H Miki; F Mignone; S Miyake; K Morris; S Mottagui-Tabar; N Mulder; N Nakano; H Nakauchi; P Ng; R Nilsson; S Nishiguchi; S Nishikawa; F Nori; O Ohara; Y Okazaki; V Orlando; K C Pang; W J Pavan; G Pavesi; G Pesole; N Petrovsky; S Piazza; J Reed; J F Reid; B Z Ring; M Ringwald; B Rost; Y Ruan; S L Salzberg; A Sandelin; C Schneider; C Schönbach; K Sekiguchi; C A M Semple; S Seno; L Sessa; Y Sheng; Y Shibata; H Shimada; K Shimada; D Silva; B Sinclair; S Sperling; E Stupka; K Sugiura; R Sultana; Y Takenaka; K Taki; K Tammoja; S L Tan; S Tang; M S Taylor; J Tegner; S A Teichmann; H R Ueda; E van Nimwegen; R Verardo; C L Wei; K Yagi; H Yamanishi; E Zabarovsky; S Zhu; A Zimmer; W Hide; C Bult; S M Grimmond; R D Teasdale; E T Liu; V Brusic; J Quackenbush; C Wahlestedt; J S Mattick; D A Hume; C Kai; D Sasaki; Y Tomaru; S Fukuda; M Kanamori-Katayama; M Suzuki; J Aoki; T Arakawa; J Iida; K Imamura; M Itoh; T Kato; H Kawaji; N Kawagashira; T Kawashima; M Kojima; S Kondo; H Konno; K Nakano; N Ninomiya; T Nishio; M Okada; C Plessy; K Shibata; T Shiraki; S Suzuki; M Tagami; K Waki; A Watahiki; Y Okamura-Oho; H Suzuki; J Kawai; Y Hayashizaki
Journal:  Science       Date:  2005-09-02       Impact factor: 47.728

7.  Characterization of the structure, function, and mechanism of B2 RNA, an ncRNA repressor of RNA polymerase II transcription.

Authors:  Celso A Espinoza; James A Goodrich; Jennifer F Kugel
Journal:  RNA       Date:  2007-02-16       Impact factor: 4.942

8.  Real-time quantification of microRNAs by stem-loop RT-PCR.

Authors:  Caifu Chen; Dana A Ridzon; Adam J Broomer; Zhaohui Zhou; Danny H Lee; Julie T Nguyen; Maura Barbisin; Nan Lan Xu; Vikram R Mahuvakar; Mark R Andersen; Kai Qin Lao; Kenneth J Livak; Karl J Guegler
Journal:  Nucleic Acids Res       Date:  2005-11-27       Impact factor: 16.971

Review 9.  Host-virus interaction: a new role for microRNAs.

Authors:  Vinod Scaria; Manoj Hariharan; Souvik Maiti; Beena Pillai; Samir K Brahmachari
Journal:  Retrovirology       Date:  2006-10-11       Impact factor: 4.602

10.  Predicting transcription factor binding sites using local over-representation and comparative genomics.

Authors:  Matthieu Defrance; Hélène Touzet
Journal:  BMC Bioinformatics       Date:  2006-08-31       Impact factor: 3.169

View more
  11 in total

1.  TFM-Explorer: mining cis-regulatory regions in genomes.

Authors:  Laurie Tonon; Hélène Touzet; Jean-Stéphane Varré
Journal:  Nucleic Acids Res       Date:  2010-06-03       Impact factor: 16.971

2.  The chicken miR-150 targets the avian orthologue of the functional zebrafish MYB 3'UTR target site.

Authors:  Audrey Guillon-Munos; Ginette Dambrine; Nicolas Richerioux; Damien Coupeau; Benoît Muylkens; Denis Rasschaert
Journal:  BMC Mol Biol       Date:  2010-09-02       Impact factor: 2.946

3.  Unique signatures of long noncoding RNA expression in response to virus infection and altered innate immune signaling.

Authors:  Xinxia Peng; Lisa Gralinski; Christopher D Armour; Martin T Ferris; Matthew J Thomas; Sean Proll; Birgit G Bradel-Tretheway; Marcus J Korth; John C Castle; Matthew C Biery; Heather K Bouzek; David R Haynor; Matthew B Frieman; Mark Heise; Christopher K Raymond; Ralph S Baric; Michael G Katze
Journal:  mBio       Date:  2010-10-26       Impact factor: 7.867

4.  The Differential Expression and Possible Function of Long Noncoding RNAs in Liver Cells Infected by Dengue Virus.

Authors:  Xiao-Jun Wang; Shi-Chen Jiang; Hai-Xia Wei; Sheng-Qun Deng; Cheng He; Hong-Juan Peng
Journal:  Am J Trop Med Hyg       Date:  2017-09-28       Impact factor: 2.345

Review 5.  Long Non-Coding RNAs: Emerging and Versatile Regulators in Host-Virus Interactions.

Authors:  Xing-Yu Meng; Yuzi Luo; Muhammad Naveed Anwar; Yuan Sun; Yao Gao; Huawei Zhang; Muhammad Munir; Hua-Ji Qiu
Journal:  Front Immunol       Date:  2017-11-28       Impact factor: 7.561

Review 6.  Long non-coding RNAs in the failing heart and vasculature.

Authors:  Steffie Hermans-Beijnsberger; Marc van Bilsen; Blanche Schroen
Journal:  Noncoding RNA Res       Date:  2018-04-14

7.  Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach.

Authors:  Ying Wang; Vinayak Brahmakshatriya; Huifeng Zhu; Blanca Lupiani; Sanjay M Reddy; Byung-Jun Yoon; Preethi H Gunaratne; Jong Hwan Kim; Rui Chen; Junjun Wang; Huaijun Zhou
Journal:  BMC Genomics       Date:  2009-11-05       Impact factor: 3.969

8.  Long non-coding RNAs (lncRNAs) and viral infections.

Authors:  Quan Zhang; Kuan-Teh Jeang
Journal:  Biomed Pharmacother       Date:  2013-03-01       Impact factor: 6.529

9.  Long noncoding RNAs (lncRNAs) dynamics evidence immunomodulation during ISAV-Infected Atlantic salmon (Salmo salar).

Authors:  Sebastian Boltaña; Diego Valenzuela-Miranda; Andrea Aguilar; Simon Mackenzie; Cristian Gallardo-Escárate
Journal:  Sci Rep       Date:  2016-03-04       Impact factor: 4.379

10.  lncRNA expression signatures in response to enterovirus 71 infection.

Authors:  Zhixin Yin; Dawei Guan; Qin Fan; Juan Su; Wenling Zheng; Wenli Ma; Changwen Ke
Journal:  Biochem Biophys Res Commun       Date:  2012-12-05       Impact factor: 3.575

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.