Literature DB >> 11125087

The non-coding RNAs as riboregulators.

V A Erdmann1, M Z Barciszewska, M Szymanski, A Hochberg, N de Groot, J Barciszewski.   

Abstract

The non-coding RNAs database (http://biobases.ibch.poznan.pl/ncRNA/) contains currently available data on RNAs, which do not have long open reading frames and act as riboregulators. Non-coding RNAs are involved in the specific recognition of cellular nucleic acid targets through complementary base pairing to control cell growth and differentiation. Some of them are connected with several well known developmental and neuro-behavioral disorders. We have divided them into four groups. This paper is a short introduction to the database and presents its latest, updated edition.

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Year:  2001        PMID： 11125087      PMCID： PMC29806          DOI： 10.1093/nar/29.1.189

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  51 in total

1.  LIT1, an imprinted antisense RNA in the human KvLQT1 locus identified by screening for differentially expressed transcripts using monochromosomal hybrids.

Authors:  K Mitsuya; M Meguro; M P Lee; M Katoh; T C Schulz; H Kugoh; M A Yoshida; N Niikawa; A P Feinberg; M Oshimura
Journal:  Hum Mol Genet       Date:  1999-07       Impact factor: 6.150

2.  A novel imprinted gene, encoding a RING zinc-finger protein, and overlapping antisense transcript in the Prader-Willi syndrome critical region.

Authors:  M T Jong; T A Gray; Y Ji; C C Glenn; S Saitoh; D J Driscoll; R D Nicholls
Journal:  Hum Mol Genet       Date:  1999-05       Impact factor: 6.150

3.  A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures.

Authors:  R A Lease; M Belfort
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-29       Impact factor: 11.205

4.  Loss of imprinting of a paternally expressed transcript, with antisense orientation to KVLQT1, occurs frequently in Beckwith-Wiedemann syndrome and is independent of insulin-like growth factor II imprinting.

Authors:  M P Lee; M R DeBaun; K Mitsuya; H L Galonek; S Brandenburg; M Oshimura; A P Feinberg
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-27       Impact factor: 11.205

5.  Multiple hok genes on the chromosome of Escherichia coli.

Authors:  K Pedersen; K Gerdes
Journal:  Mol Microbiol       Date:  1999-06       Impact factor: 3.501

6.  The timing of lin-4 RNA accumulation controls the timing of postembryonic developmental events in Caenorhabditis elegans.

Authors:  R Feinbaum; V Ambros
Journal:  Dev Biol       Date:  1999-06-01       Impact factor: 3.582

7.  Imprinting of a RING zinc-finger encoding gene in the mouse chromosome region homologous to the Prader-Willi syndrome genetic region.

Authors:  M T Jong; A H Carey; K A Caldwell; M H Lau; M A Handel; D J Driscoll; C L Stewart; E M Rinchik; R D Nicholls
Journal:  Hum Mol Genet       Date:  1999-05       Impact factor: 6.150

8.  The solution structure of an RNA loop-loop complex: the ColE1 inverted loop sequence.

Authors:  A J Lee; D M Crothers
Journal:  Structure       Date:  1998-08-15       Impact factor: 5.006

9.  Drosophila kelch is an oligomeric ring canal actin organizer.

Authors:  D N Robinson; L Cooley
Journal:  J Cell Biol       Date:  1997-08-25       Impact factor: 10.539

Review 10.  New insights into the function of noncoding RNA and its potential role in disease pathogenesis.

Authors:  D S Askew; F Xu
Journal:  Histol Histopathol       Date:  1999-01       Impact factor: 2.303
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  42 in total

1.  Non-coding RNAs: the architects of eukaryotic complexity.

Authors:  J S Mattick
Journal:  EMBO Rep       Date:  2001-11       Impact factor: 8.807

2.  Identification and analysis of Arabidopsis expressed sequence tags characteristic of non-coding RNAs.

Authors:  G C MacIntosh; C Wilkerson; P J Green
Journal:  Plant Physiol       Date:  2001-11       Impact factor: 8.340

3.  Analysis of similarity within 142 pairs of orthologous intergenic regions of Caenorhabditis elegans and Caenorhabditis briggsae.

Authors:  Colleen T Webb; Svetlana A Shabalina; Aleksey Yu Ogurtsov; Alexey S Kondrashov
Journal:  Nucleic Acids Res       Date:  2002-03-01       Impact factor: 16.971

4.  Plant snoRNA database.

Authors:  John W S Brown; Manuel Echeverria; Liang-Hu Qu; Todd M Lowe; Jean-Pierre Bachellerie; Alexander Hüttenhofer; James P Kastenmayer; Pamela J Green; Paul Shaw; Dave F Marshall
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

5.  Noncoding regulatory RNAs database.

Authors:  Maciej Szymański; Volker A Erdmann; Jan Barciszewski
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

Review 6.  Gene duplication and other evolutionary strategies: from the RNA world to the future.

Authors:  Jürgen Brosius
Journal:  J Struct Funct Genomics       Date:  2003

7.  Undulated short-tail deletion mutation in the mouse ablates Pax1 and leads to ectopic activation of neighboring Nkx2-2 in domains that normally express Pax1.

Authors:  Chikara Kokubu; Bettina Wilm; Tomoko Kokubu; Matthias Wahl; Isabel Rodrigo; Norio Sakai; Fabio Santagati; Yoshihide Hayashizaki; Misao Suzuki; Ken-Ichi Yamamura; Kuniya Abe; Kenji Imai
Journal:  Genetics       Date:  2003-09       Impact factor: 4.562

8.  A new role for expressed pseudogenes as ncRNA: regulation of mRNA stability of its homologous coding gene.

Authors:  Yoshihisa Yano; Rintaro Saito; Noriyuki Yoshida; Atsushi Yoshiki; Anthony Wynshaw-Boris; Masaru Tomita; Shinji Hirotsune
Journal:  J Mol Med (Berl)       Date:  2004-05-18       Impact factor: 4.599

9.  Enod40, a short open reading frame-containing mRNA, induces cytoplasmic localization of a nuclear RNA binding protein in Medicago truncatula.

Authors:  Anna Campalans; Adam Kondorosi; Martin Crespi
Journal:  Plant Cell       Date:  2004-03-22       Impact factor: 11.277

10.  Targeting diphtheria toxin and TNF alpha expression in ovarian tumors using the H19 regulatory sequences.

Authors:  Aya Mizrahi; Abraham Hochberg; Smadar Amiur; Jennifer Gallula; Imad Matouk; Tatiana Birman; Tally Levy; Sorin Ladimir; Patricia Ohana
Journal:  Int J Clin Exp Med       Date:  2010-09-21
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