Literature DB >> 12519967

The GENETPIG database: a tool for comparative mapping in pig (Sus scrofa).

Emmanuelle Karsenty1, Emmanuel Barillot, Gwenola Tosser-Klopp, Yvette Lahbib-Mansais, Denis Milan, François Hatey, Susanna Cirera, Milena Sawera, Claus B Jørgensen, Bhanu Chowdhary, Merete Fredholm, Klaus Wimmers, Siriluck Ponsuksili, Roberta Davoli, Luca Fontanesi, Silvia Braglia, Paolo Zambonelli, Daniele Bigi, Stefan Neuenschwander, Joël Gellin.   

Abstract

The GENETPIG database has been established for storing and disseminating the results of the European project: 'GENETPIG: identification of genes controlling economic traits in pig'. The partners of this project have mapped about 630 porcine and human ESTs onto the pig genome. The database collects the mapping results and links them to other sources of mapping data; this includes pig maps as well as available comparative mapping information. Functional annotation of the mapped ESTs is also given when a significant similarity to cognate genes was established. The database is accessible for consultation via the Internet at http://www.infobiogen.fr/services/Genetpig/.

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Year:  2003        PMID: 12519967      PMCID: PMC165508          DOI: 10.1093/nar/gkg061

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  21 in total

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Authors:  F Guyon; G Vaysseix; E Barillot
Journal:  Pac Symp Biocomput       Date:  2000

2.  The EMBL Nucleotide Sequence Database.

Authors:  Guenter Stoesser; Wendy Baker; Alexandra van den Broek; Evelyn Camon; Maria Garcia-Pastor; Carola Kanz; Tamara Kulikova; Rasko Leinonen; Quan Lin; Vincent Lombard; Rodrigo Lopez; Nicole Redaschi; Peter Stoehr; Mary Ann Tuli; Katerina Tzouvara; Robert Vaughan
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

3.  IMpRH server: an RH mapping server available on the Web.

Authors:  D Milan; R Hawken; C Cabau; S Leroux; C Genet; Y Lahbib; G Tosser; A Robic; F Hatey; L Alexander; C Beattie; L Schook; M Yerle; J Gellin
Journal:  Bioinformatics       Date:  2000-06       Impact factor: 6.937

4.  Mapping of 14 expressed sequence tags (ESTs) from porcine skeletal muscle by somatic cell hybrid analysis.

Authors:  R Davoli; D Bigi; L Fontanesi; P Zambonelli; M Yerle; C Zijlstra; A A Bosma; A Robic; V Russo
Journal:  Anim Genet       Date:  2000-12       Impact factor: 3.169

5.  The Mouse Genome Database (MGD): the model organism database for the laboratory mouse.

Authors:  Judith A Blake; Joel E Richardson; Carol J Bult; Jim A Kadin; Janan T Eppig
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

6.  Database resources of the National Center for Biotechnology Information: 2002 update.

Authors:  David L Wheeler; Deanna M Church; Alex E Lash; Detlef D Leipe; Thomas L Madden; Joan U Pontius; Gregory D Schuler; Lynn M Schriml; Tatiana A Tatusova; Lukas Wagner; Barbara A Rapp
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

7.  Characterization of FSH-regulated genes isolated by mRNA differential display from pig ovarian granulosa cells.

Authors:  C Clouscard-Martinato; P Mulsant; A Robic; A Bonnet; F Gasser; F Hatey
Journal:  Anim Genet       Date:  1998-04       Impact factor: 3.169

8.  A first-generation porcine whole-genome radiation hybrid map.

Authors:  R J Hawken; J Murtaugh; G H Flickinger; M Yerle; A Robic; D Milan; J Gellin; C W Beattie; L B Schook; L J Alexander
Journal:  Mamm Genome       Date:  1999-08       Impact factor: 2.957

9.  Comparative mapping between humans and pigs: localization of 58 anchorage markers (TOASTs) by use of porcine somatic cell and radiation hybrid panels.

Authors:  Y Lahbib-Mansais; S Leroux; D Milan; M Yerle; A Robic; Z Jiang; C André; J Gellin
Journal:  Mamm Genome       Date:  2000-12       Impact factor: 2.957

10.  Construction of a whole-genome radiation hybrid panel for high-resolution gene mapping in pigs.

Authors:  M Yerle; P Pinton; A Robic; A Alfonso; Y Palvadeau; C Delcros; R Hawken; L Alexander; C Beattie; L Schook; D Milan; J Gellin
Journal:  Cytogenet Cell Genet       Date:  1998
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  2 in total

1.  Comparative mapping in the pig: localization of 214 expressed sequence tags.

Authors:  Susanna Cirera; Claus B Jørgensen; Milena Sawera; Terje Raudsepp; Bhanu P Chowdhary; Merete Fredholm
Journal:  Mamm Genome       Date:  2003-06       Impact factor: 2.957

2.  Isolation of fresh endothelial cells from porcine heart for cardiovascular studies: a new fast protocol suitable for genomic, transcriptomic and cell biology studies.

Authors:  Olli-Pekka A Hätinen; Johanna E Lähteenvuo; Henna J Korpela; Juho J Pajula; Seppo Ylä-Herttuala
Journal:  BMC Mol Cell Biol       Date:  2019-08-13
  2 in total

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